use .bed file for IGV report sites

mskcc / pluto-cwl

CWL workflows for helix filter scripts

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Open stevekm opened 3 years ago

stevekm commented 3 years ago

Right now the CWL for IGV reports has a tabix indexed .vcf.gz file input, need to see if that can be just a bed file

stevekm commented 3 years ago

until this is implemented, will have to convert maf to vcf.gz with tabix index