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mskcc / pluto-cwl

CWL workflows for helix filter scripts
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Need pipeline reports #46

Closed stevekm closed 2 years ago

stevekm commented 3 years ago

related to #43 #41 #32 https://github.com/mskcc/helix_filters_01/issues/58 need to get some formal pipeline report outputs

stevekm commented 3 years ago

requires OncoKB annotations as well but we should start implementing a small basic report ASAP

https://github.com/mskcc/pluto-cwl/issues/60

stevekm commented 3 years ago

also include the software and methods in the reports eventually

https://github.com/mskcc/pluto-cwl/issues/53

stevekm commented 3 years ago

use the Tempo report (https://github.com/mskcc/cas-ops/tree/tempo-report/tempo/report) for example to start along with other code examples (https://github.com/NYU-Molecular-Pathology/NGS580-nf/tree/master/report/analysis)

stevekm commented 2 years ago

the base report is implemented, it will be extended by the features listed in the other Issues mentioned here.