Need to include information about concordant and discordant variants between a number of samples. The most basic case is 1 research sample vs. 1 clinical sample.
We already have
samples_fillout_workflow.cwl for doing fillout on a set of samples, each with their own maf files (variant list)
I think samples_fillout_workflow.cwl might fit this use case, however it could also be supplemented with bcftools isec as per #41 and Conpair/Somalier/etc. as per #32
Need to wrap all this up into a single cohesive package as per #46
Need to include information about concordant and discordant variants between a number of samples. The most basic case is 1 research sample vs. 1 clinical sample.
We already have
samples_fillout_workflow.cwlfor doing fillout on a set of samples, each with their own maf files (variant list)fillout_workflow.cwlfor doing fillout on a set of samples vs. a single mafI think
samples_fillout_workflow.cwlmight fit this use case, however it could also be supplemented withbcftools isecas per #41 and Conpair/Somalier/etc. as per #32Need to wrap all this up into a single cohesive package as per #46