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mskcc / pluto-cwl

CWL workflows for helix filter scripts
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Portal files output needs new line (meta_mutations_extended.txt) #65

Closed timosong closed 2 years ago

timosong commented 3 years ago

The meta_mutations_extended.txt file needs the following line added in: namespaces: ASCN https://docs.cbioportal.org/5.1-data-loading/data-loading/file-formats#example-10

Example: meta_mutations_extended.txt cancer_study_identifier: set_ldiaz data_filename: data_mutations_extended.txt datatype: MAF genetic_alteration_type: MUTATION_EXTENDED profile_description: Mutation data profile_name: Mutations show_profile_in_analysis_tab: true stable_id: mutations namespaces: ASCN

stevekm commented 3 years ago

this is merged, should be included with the next release

stevekm commented 2 years ago

I think this is fixed now