New facets columns not output in portal mutation file

mskcc / pluto-cwl

CWL workflows for helix filter scripts

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New facets columns not output in portal mutation file #7

Closed stevekm closed 4 years ago

stevekm commented 4 years ago

The extra columns added by the Facets workflow are not being output to the final data_mutations_extended.txt file. It seems that everything after the 45th column is getting dropped by the maf_filter.py script. Need to fix this to include the new columns

stevekm commented 4 years ago

This should be fixed in the latest helix filters repo, need to make a new release here to use that