search

mskcc / pluto-cwl

CWL workflows for helix filter scripts
1 stars 6 forks source link

incorporate dos2unix into samples fillout workflow (resurrection workflow) #70

Open stevekm opened 2 years ago

stevekm commented 2 years ago

Need to get dos2unix included in here to deal with some issues with vcf2maf

https://github.com/mskcc/pluto-cwl/blob/3365f10eef3b0afd560f30526aed2632216c0901/cwl/samples_fillout_workflow.cwl#L72

stevekm commented 2 years ago

Note that this is needed because some of the split DMP maf files seem to have carriage returns embedded in some cases