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mskcc / pluto-cwl

CWL workflows for helix filter scripts
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Use concat-tables.py / concat-tables.cwl instead of concat.cwl, concat_with_comments.cwl #9

Closed stevekm closed 4 years ago

stevekm commented 4 years ago

The concat-tables.py script has been updated for comment handling, so we should be able to remove the old concatenation CWL modules and scripts. This will bring greater flexibility to the workflow, especially in the ability to handled mixed input files e.g. Argos .maf files + Facets Suite workflow maf files mixed together, and other places where pre-header comments are needed along with variable column handling. (#6)

stevekm commented 4 years ago

updated this for maf file handling. Will update any others I find as needed later.