Update test cases for Jenkins

mskcc / pluto-cwl

CWL workflows for helix filter scripts

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Closed stevekm closed 1 year ago

stevekm commented 2 years ago

some test cases are not working well with Jenkins

need to make a list of all the troublesome test cases and get them updated cleanly to work with Jenkins better

stevekm commented 2 years ago

@nikhil

Test case requirements for Jenkins

Integration testing (with Toil + LSF):

make integration-test recipe
- python tests/test_workflow_with_facets.xl.py
- python tests/test_workflow_with_facets.medium.py
- python tests/test_samples_fillout_index_workflow_cwl.py

Unit tests (cwltool only):

make test3 recipe (TODO: rename this recipe!)
- tests/test_*.py EXCEPT entries run by make integration-test
pluto/test_tools.py
pluto/test_serializer.py

stevekm commented 2 years ago

This should be fixed on dev, need to verify with the CI runner

stevekm commented 1 year ago

the test cases are finished so closing this but right now it seems that Jenkins is having issues with the pwd when executing.