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Display dbGap study in sample view and add dbGap tab
#1198
Open
ao508
opened
2 weeks ago
ao508
commented
2 weeks ago
Tasks:
Add dbGap to displayed data on sample table
Add a tab for viewing dbGap data
When in dbGap view, allow PMs to export data for submitting to dbGap
The data collected/exported for dbGap should include:
SUBJECT_ID (CMO patient ID)
SAMPLE_ID (Sample CMO label)
SEX (from sample metadata
RACE (do not have yet)
CANCER_TYPE (from sample metadata)
BODY_SITE (from sample metadata)
ANALYTE_TYPE (may be resolved from existing sample metadata)
IS_TUMOR (from sample metadata)
SAMPLE_TYPE (from sample metadata)
HISTOLOGICAL_TYPE (from sample metadata)
HISTOLOGICAL_SUBTYPE (do not have yet)
SEQUENCING_PANEL (from sample metadata)
PLATFORM (do not have yet but might be able to get mapping from Voyager team)
INSTRUMENT_MODEL (do not have yet but might be able to get mapping from Voyager team)
Tasks:
The data collected/exported for dbGap should include: