Fill in missing 12-245 consent part a/c status

Example patient: P-0000055

match (p:Patient)<-[:IS_ALIAS]-(pa:PatientAlias{value:"P-0000055"}) return p

This patient actually has a single DMP sample with the following additionalProperties, including consent part a/c statuses. But the dashboard entry for this patient does not show anything for Part A/C consent status columns. Seems to suggest that there is a bug with how the consent status is rendered.

  "additionalProperties": {
    "standard_coverage": "910",
    "consent-parta": "YES",
    "tmb_cohort_percentile": "74.4",
    "consent-partc": "NO",
    "tmb_score": "6.7",
    "tmb_tt_percentile": "59.2",
    "msi-score": "0.40",
    "msi-type": "Stable",
    "msi-comment": "Not Available"
  }

For clinical samples that are in fact missing the consent statuses..

A script will need to grab consent statuses for DMP patients and then this info will need to get added to samples at the metadata > additional properties level

For each clinical sample that is missing additonalProperties > parta/c consent status:

mskcc / smile-server

Fill in missing 12-245 consent part a/c status #1259