Closed evanbiederstedt closed 4 years ago
@evanbiederstedt What is the status of this?
@kpjonsson I have a bit of R code which parses the column in the MAF to be used by the code. I'll throw it into Jason's container, and then we're good to go.
If this is quick it can be run in the same process as the mutation-signature
code. The Ref_Tri
is column is added in a prior step.
If this is quick it can be run in the same process as the mutation-signature code. The Ref_Tri is column is added in a prior step.
I think the SigFit should be a separate process after the make_trinuc
step. It's a different animal, with a different docker container
Working on this now
@evanbiederstedt Status on this?
It's depressing to admit, but this is now on the backburner until outputs finalized.
Ok, no big deal in my opinion.
....I disappointed the group, I disappointed the CMO....
but I'm really disappointed in myself :disappointed_relieved:
We decided to go with @junwoo2 's https://github.com/mskcc/temposig
I think at the moment, we are using both Adam Abehouse's code and the sigfit code.
Refer to https://github.com/mskcc/vaporware/issues/186