revise `neoantigen` Docker image

[evanbiederstedt]

The Dockerfile here obviously isn't a long term solution (and actually don't make sense for reproducibility)

FROM biocontainers/biocontainers:latest

LABEL base.image="biocontainers:latest"
LABEL version="1"
LABEL software="NetMHC"
LABEL software.version="4.0"
LABEL description="Prediction of peptide-MHC class I binding using artificial neural networks"
LABEL tags="Genomics"

MAINTAINER Yueyuxiao Yang <kevinyyyx@gmail.com>

USER root

RUN apt-get update && apt-get install -y tcsh libnss-sss && \
    apt-get clean && apt-get purge && \
        rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
COPY . .

https://hub.docker.com/r/yangyueyuxiao/netmhc

It looks like they had netMHCpan locally installed, they then copied the contents into the container, and created the Docker container.

The changes to /data are not persistent

http://www.cbs.dtu.dk/services/doc/netMHCpan-4.0.readme

Otherwise, it's just taylor-lab/neoantigen-dev and 4 python libraries

[evanbiederstedt]

Nevermind

Apparently the way to get the tarballs is via e-mail to Copenhagen....