mwang87 / ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data
https://redu.ucsd.edu/
MIT License
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Inclusion of mitragyna species in the ReDu template #215

Closed saghadejia closed 3 years ago

saghadejia commented 4 years ago

I write to request inclusion of mitragyna species in the ReDu template for metadata, because i have checked but i actually not find any mitragyna specie in the template

alan-jarmusch commented 4 years ago

Hi, sorry for the slow reply I've been on a long holiday. are there any species of particular interest in NCBI (https://www.ncbi.nlm.nih.gov/taxonomy)? we are adding things are requested

saghadejia commented 4 years ago

We are working on Mitragyna species, these are species needed to be added on the ReDU: Mitragyna tubulosa, Mitragyna parvifolia, Mitragyna hirsute, Mutragyna diversifolia, Mitragyna rotundifolia, Mitragyna speciosa, Mitragyna ciliate, Mitragyna inermis, Mitrgyna stipulosa and Mitragyna africanus

alan-jarmusch commented 4 years ago

thanks. I have added the following based on your request and what is available in NCBI (if it doesn't appear in NCBI it is labeled as "not specified")

alan-jarmusch commented 4 years ago

1442754|Mitragyna tubulosa

1288021|Mitragyna parvifolia 371154|Mitragyna hirsuta 170022|Mitragyna diversifolia 170024|Mitragyna rotundifolia 170351|Mitragyna speciosa not specified|Mitragyna ciliate 170023|Mitragyna inermis not specified|Mitrgyna stipulosa not specified|Mitragyna africanus