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mwang87 / ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data
https://redu.ucsd.edu/
MIT License
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Add species to ReDU Sample Information Template v3.0 #231

Closed JoaoMagc closed 3 years ago

JoaoMagc commented 3 years ago

I'm working with some Solanum samples and need to build a metadata table with your model to use later with GNPS. Can you please add the following species to the NCBI taxonomy column? Solanum argenteum Solanum asperum Solanum campaniforme Solanum cinnamomeum Solanum cladotrichum Solanum didymium Solanum sanctae-catharinae Solanum schwackeanum Solanum swartzianum Solanum vaillanti Solanum variabile

alan-jarmusch commented 3 years ago

hi @JoaoMagc. could you please provide the NCBI taxonomy identifier (if applicable)? https://www.ncbi.nlm.nih.gov/taxonomy

JoaoMagc commented 3 years ago

Hey, Alan. Thanks for your response. Here they go:

2072293 | Solanum argenteum 681489 | Solanum asperum Solanum campaniforme - not found Solanum cinnamomeum - not found 2598623 | Solanum cladotrichum 2364065 | Solanum didymum Solanum sanctae-catharinae - not found 2072295 | Solanum swartzianum 282179 | Solanum vaillantii Solanum variabile - not found

alan-jarmusch commented 3 years ago

Hi @JoaoMagc I apologize for the long delay. I've added the options to the template. You will have to save a new copy of the template, but you can copy and paste the information you have already entered. thanks for your interest! 2072293|Solanum argenteum 681489|Solanum asperum not specified|Solanum campaniforme not specified|Solanum cinnamomeum 2598623|Solanum cladotrichum 2364065|Solanum didymum 2072295|Solanum swartzianum 282179|Solanum vaillantii not specified|Solanum variabile not specified|Solanum sanctae-catharinae

JoaoMagc commented 3 years ago

Hey @alan-jarmusch. Just realized I forgot to ask for not specified|Solanum schwackeanum as well. Could you please also add this one?

alan-jarmusch commented 3 years ago

@JoaoMagc it's been added

JoaoMagc commented 3 years ago

Thanks, @alan-jarmusch! I have all I need to start working now :)