New NCBI species entries addition in the controlled vocabulary - Githubissues

mwang87 / ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data

https://redu.ucsd.edu/

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New NCBI species entries addition in the controlled vocabulary #235

Closed oolonek closed 3 years ago

oolonek commented 3 years ago

Hi @alan-jarmusch and ReDu team,

Could you please add the following species to the ReDu controlled vocabulary ?

Many thanks !

2044324|Codariocalyx gyroides 798326|Ischaemum indicum 1892693|Gentiana pubigera 1898882|Oxyspora paniculata 451700|Corylopsis multiflora 201513|Clerodendrum yunnanense 1348735|Pedicularis henryi 1049785|Peracarpa carnosa 1092581|Hemarthria compressa 435764|Ottochloa nodosa 344832|Pilea plataniflora 50810|Tripterospermum cordatum 49036|Paraboea rufescens 1701078|Eremogone saxatilis 180758|Vaccinium fragile 91508|Apluda mutica 1718245|Hildaea pallens 496686|Pimpinella candolleana 57009|Sambucus javanica 272673|Aglaomorpha bonii 162718|Copaifera salikounda 50346|Saccharum arundinaceum 2100126|Persicaria tenella 171939|Mangifera pentandra 1006144|Tetrastigma strumarum 1052008|Cyperus diffusus 397404|Strombosia grandifolia 1940509|Aubrevillea kerstingii 1521447|Triplochiton scleroxylon 61310|Platycerium angolense 105906|Succisa pratensis 172216|Craterispermum laurinum 233668|Autranella congolensis 312427|Caloncoba welwitschii 103768|Whitfieldia elongata 81982|Pseudoturritis turrita 75960|Cicerbita muralis 1007327|Desplatsia dewevrei 1321794|Chrysophyllum subnudum 59788|Megathyrsus maximus 244001|Asplenium onopteris 340443|Dipterocarpus tuberculatus 2516486|Enkleia malaccensis 338494|Gigantochloa albociliata 1651117|Gnetum edule 1633950|Vaccinium urceolatum 138141|Globba campsophylla 65979|Leersia hexandra 292001|Hopea helferi 2282342|Gigantochloa parvifolia 76444|Fimbristylis dichotoma 432674|Viburnum brachybotryum 241844|Dolichandrone spathacea 2545981|Gonocaryum lobbianum 131256|Arenga caudata 152390|Dipterocarpus retusus 1489667|Hymenocardia punctata 549705|Hymenopyramis brachiata 450288|Piper wallichii 698833|Elsholtzia fruticosa 861395|Gaultheria cuneata 1346085|Millettia congestiflora 185530|Ilex macrocarpa 221766|Cyathula prostrata 751800|Clinopodium megalanthum 99386|Begonia palmata 1872703|Ilex szechwanensis 173671|Aucuba himalaica 539895|Potentilla lineata 642903|Sanicula astrantiifolia 1441986|Goniothalamus gabriacianus 870738|Senna timorensis 1068520|Lobelia seguinii 62858|Satyrium 1054458|Trichosanthes dunniana 170020|Hymenodictyon flaccidum 138164|Globba winitii 1399737|Pouzolzia sanguinea 62865|Satyrium nepalense 909202|Viola yunnanfuensis 45463|Sambucus racemosa subsp. sieboldiana 653096|Phanera ornata 155136|Stauntonia brunoniana 86093|Lindenbergia philippensis 148569|Lygodium salicifolium 324555|Halopegia blumei 748694|Clematis chrysocoma 43864|Buchanania latifolia 2021390|Helwingia omeiensis 489313|Entada gigas 338571|Amaranthus blitum 319607|Phyllanthus pulcher 1592029|Allospondias lakonensis 1529617|Acacia megaladena 1489448|Aporosa planchoniana 83431|Selenicereus 2100677|Mussaenda rehderiana 748691|Clematis brevicaudata 1531353|Galium asperifolium 198854|Indigofera amblyantha 1237824|Suregada procera 557013|Mischocarpus pentapetalus 928046|Chlorophytum minor 38789|Clematis apiifolia 748704|Clematis meyeniana 69848|Carex baccans 1127383|Crotalaria laevigata 2291900|Cyphostemma elephantopus 857597|Dombeya lucida 1007786|Gladiolus italicus 756371|Cyphostemma laza 3990|Euphorbia 48523|Ehretia cymosa 209324|Euphorbia cedrorum 2047853|Ehretia microcalyx 303142|Halleria tetragona 212953|Euphorbia pervilleana 185054|Cynanchum mahafalense 178803|Cyphostemma 1171751|Dombeya greveana 69116|Adansonia za 655924|Senna meridionalis 318970|Commiphora brevicalyx 80335|Commiphora monstruosa 69114|Adansonia rubrostipa 387526|Adenia monadelpha 204110|Capitanopsis angustifolia 80336|Commiphora simplicifolia 578535|Calopyxis grandidieri 1173008|Commiphora lamii 387527|Adenia olaboensis 2485361|Capitanopsis cloiselii 202626|Cadaba virgata 184278|Cerbera venenifera 318969|Commiphora aprevalii 1132602|Crotalaria fiherenensis 1132605|Crotalaria grevei 511494|Boscia longifolia 117962|Kalanchoe arborescens 439928|Megistostegium microphyllum 58040|Nymphaea nouchali 319571|Phyllanthus casticum 141600|Plectaneia stenophylla 658448|Megistostegium nodulosum 289730|Operculicarya 1548629|Pluchea grevei 80903|Kalanchoe linearifolia 439929|Megistostegium perrieri 1592051|Operculicarya pachypus 439908|Hibiscus ferrugineus 289731|Operculicarya decaryi 1009579|Loeseneriella urceolus 1225832|Psiadia glutinosa 1097630|Solanum erythracanthum 115666|Solanum macrocarpon 201021|Turraea sericea 4184|Uncarina grandidieri 166048|Uncarina 1225819|Psiadia angustifolia 1879238|Solanum heteracanthum 227487|Typhonodorum lindleyanum 43543|Salvadora angustifolia 74960|Tambourissa amplifolia 191659|Sansevieria metallica 171014|Cycas siamensis 1747696|Dillenia obovata 2594747|Eriocaulon sexangulare 1225699|Solori scandens 1381998|Dischidia nummularia 1818588|Dolichandrone columnaris 2306765|Connarus semidecandrus 682665|Euodia simplicifolia 13529|Flagellaria indica 1367315|Diospyros pilosanthera 640652|Dillenia hookeri 1489652|Garcinia lanessanii 1095265|Antidesma ghaesembilla 1489464|Buchanania reticulata 941537|Cananga brandisiana 345108|Cissus repanda 1051490|Xerophyta dasylirioides 709053|Artocarpus nitidus 1229245|Bauhinia bracteata 577036|Cleistanthus tomentosus 1755451|Ampelocissus arachnoidea 416185|Atalantia citroides 515877|Xerosicyos perrieri 1489466|Calamus salicifolius 149356|Causonis trifolia 388302|Xerosicyos pubescens 1489748|Mangifera duperreana 1879252|Solanum sakhanii 429529|Spirolobium cambodianum 218181|Lithocarpus elegans 1248968|Olax imbricata 2498814|Sesbania javanica 1489751|Melastoma saigonense 2100654|Mussaenda cambodiana 1227989|Bauhinia viridescens 1006109|Tetrastigma cruciatum 1489450|Aporosa villosa 2021211|Indocypraea montana 148567|Lygodium palmatum 34175|Tradescantia zebrina 58032|Dioon 2082994|Embelia basaal 1071044|Uraria crinita 69391|Wrightia arborea 1117039|Sphagneticola calendulacea 539024|Indigofera atriceps 292647|Bismarckia nobilis 2184935|Hodgsonia macrocarpa 4640|Musa 190249|Sterculia lanceolata 469944|Garcinia verrucosa 469924|Garcinia chapelieri 1489631|Connarus cochinchinensis 161027|Moringa drouhardii 1842781|Senna gaudichaudii 62340|Hydrocharis dubia 538304|Piper massiei 714502|Solena amplexicaulis 1750992|Streblus ilicifolius 1218914|Stereospermum neuranthum 1353447|Dalbergia dongnaiensis 231911|Garcinia tinctoria 1981914|Phoebe tavoyana 128318|Isertia coccinea 174209|Dracontium polyphyllum

alan-jarmusch commented 3 years ago

Hi! Thanks for your interest.

I've updated the template. And the requested have been added. You may receive an error message during validation if you try to validate before the system updates - but if these are the only errors - then you can feel free to submit to massive.ucsd.edu and the data will be automatically "found" by ReDU when it updates.