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mwang87 / ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data
https://redu.ucsd.edu/
MIT License
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New required Terms for microbeMASST data submission #250

Closed dingsux3 closed 1 year ago

dingsux3 commented 2 years ago

Dear Ming, Congratulations on your new faculty position at UCR.

I would like to submit some data for microbeMASST and I need some new Terms for the Metatable:

SampleType archaea

SampleTypeSub1 Lake, isolates

NCBITaxonomy

2841257|Halapricum desulfuricans 253108|Natronolimnobius baerhuensis 253107|Natronolimnobius innermongolicus 2917812|Natronocalculus amylovorans 2917711|Natranaeroarchaeum aerophilus 1679096|Halococcoides cellulosivorans 2055893|Halalkaliarchaeum desulfuricum 1679083|Natrarchaeobius chitinivorans 1679076|Natronobiforma cellulotropha 1679091|Natrarchaeobius haloalkaliphilus 2044521|Natronolimnobius sulfurireducens

SampleExtractionMethod MeOH:DCM:phosphate buffer (2:1:0.8,v:v:v) Bligh and Dyer extraction-MeOH:DCM:phosphate buffer (2:1:0.8,v:v:v), MeOH:DCM:trichloroacetic acid (2:1:0.8,v:v:v)

InternalStandardsUsed deuterated betaine lipid {1,2-dipalmitoyl-sn-glycero-3-O-40-[N,N,N-trimethyl(d9)]-homoserine 1-O-hexadecyl-2-acetyl-snglycero-3-phosphocholine

Many thanks!

Best wishes, Su Ding

dingsux3 commented 2 years ago

The emoji under the SampleExtrationMethod is v: v: v

alan-jarmusch commented 1 year ago

SampleType archaea = added

SampleTypeSub1 Lake, isolates = please use "water_surface" for lake, "water_surface_isolate" for isolates

NCBITaxonomy

2841257|Halapricum desulfuricans 253108|Natronolimnobius baerhuensis 253107|Natronolimnobius innermongolicus 2917812|Natronocalculus amylovorans 2917711|Natranaeroarchaeum aerophilus 1679096|Halococcoides cellulosivorans 2055893|Halalkaliarchaeum desulfuricum 1679083|Natrarchaeobius chitinivorans 1679076|Natronobiforma cellulotropha 1679091|Natrarchaeobius haloalkaliphilus 2044521|Natronolimnobius sulfurireducens

SampleExtractionMethod MeOH:DCM:phosphate buffer (2:1:0.8,v✌️v) Bligh and Dyer extraction-MeOH:DCM:phosphate buffer (2:1:0.8,v✌️v), MeOH:DCM:trichloroacetic acid (2:1:0.8,v✌️v)

InternalStandardsUsed deuterated betaine lipid {1,2-dipalmitoyl-sn-glycero-3-O-40-[N,N,N-trimethyl(d9)]-homoserine 1-O-hexadecyl-2-acetyl-snglycero-3-phosphocholine