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mwang87 / ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data
https://redu.ucsd.edu/
MIT License
11 stars 9 forks source link

New required Terms for microbeMASST data submission #253

Open giorgialab opened 2 years ago

giorgialab commented 2 years ago

Could you add this lexicon please?

NCBI taxonomy: B. adolescentis E194a | 367928 B. animalis subsp. lactis UR1 | 555970 B. animalis subsp. animalis R101-8 | 703613 B. bifidum Ti | 500634 B. breve S1 | 518634 B. dentium B764 | 1150423 B. longum subsp. longum E194b | 216816 B. longum subsp. longum 105-A | 1679 B. longum subsp. infantis S12 | 391904 B. pseudologum subsp. pseudolongum PNC-2-9G |1437595 B. scardovii CCUG 13008 A | 1150461 B. catenulatum B669 | 566552 B. pseudocatenulatum B1279 | 547043

Sample collection: in vitro fermentation, liquid Sample extraction: Acetonitrile 3:1 water Internal standards: L-phenylalanine-d5, L-tyrosine-d4, L-tryptophan-d5 and indoleacetic acid-d2 Mass spectrometer: Synapt G2

Thanks,

Giorgia

alan-jarmusch commented 1 year ago

to facilitate update can you please update with the NCBI number | Name formatted like this (27334|Penicillium expansum)

giorgialab commented 1 year ago

Here it is!!

(367928|B. adolescentis E194a) (555970|B. animalis subsp. lactis UR1) (703613|B. animalis subsp. animalis R101-8) (500634|B. bifidum Ti) (518634|B. breve S1) (1150423|B. dentium B764) (216816|B. longum subsp. longum E194b) (1679|B. longum subsp. longum 105-A) (391904|B. longum subsp. infantis S12) (1437595|B. pseudologum subsp. pseudolongum PNC-2-9G) (1150461|B. scardovii CCUG 13008 A) (566552|B. catenulatum B669) (547043|B. pseudocatenulatum B1279)

Thanks,

Giorgia