alan-jarmusch
commented
2 years ago I've added your inclusions to the validator. thank you and apologies for the delay. I'm not sure how we can handle the NCBI accession numbers - therefore I'll keep this open for future discussion / development.
Hello! I'm writing on behalf of Prof. Giselle Tamayo research group. In order to complete the ReDu file we need to add some NCBI Taxonomic IDs for fungi that are not present in the ReDU file. The following taxa ids to add are:
NCBI Accession NCBI taxid ON756186 29916|Fusarium sp. ON756188 1955124|Volutella sp. ON756185 1856741|Tolypocladium sp. OL757372 1742635|Trichoderma rifaii ON756189 1856740|Simplicillium sp.
Our group has some fungi without a taxonomic id validated in NCBI, however, they are recognized in the BLAST. Also, we have provided additional information in published papers, since we have sequenced additional markers (i.e. TEF1 for Trichoderma species).
NCBI Accession Number NCBI taxid Taxonomy proposed OL757373|Trichoderma sp. 2901542 Trichoderma aff. crassum OL757375|Trichoderma sp. 2901544 Trichoderma aff. atroviride OL757374|Trichoderma sp. 2901543 Trichoderma aff. strigosellum
Publication with the additional information for the Trichoderma isolates: Escudero-Leyva, E., Alfaro-Vargas, P., Muñoz-Arrieta, R., Charpentier-Alfaro, C., Granados-Montero, MdM., Valverde-Madrigal, K.S., Pérez-Villanueva, M., Méndez-Rivera, M., Rodríguez-Rodríguez, C.E., Chaverri, P. & Mora-Villalobos, J.A. 2022. Tolerance and Biological Removal of Fungicides by Trichoderma Species Isolated From the Endosphere of Wild Rubiaceae Plants. Front. Agron. 3:772170. doi: 10.3389/fagro.2021.772170
Additionally, we have a bacteria strain that has a taxonomy id:
NCBI Accession Number NCBI taxid NZ_CP059899 2759525|Streptomyces sp.
Thanks in advance! Efrain.