search

mwang87 / ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data
https://redu.ucsd.edu/
MIT License
11 stars 9 forks source link

ReDU only detecting a subset of files from MassIVE dataset #264

Open mccall-lab-OU opened 2 years ago

mccall-lab-OU commented 2 years ago

For several of my MassIVE datasets, ReDU only detects a few of the files. For example, for MSV000084016, the validator gives the metadata file a pass, but only lists 4 massive_files_founds, from a total of 131 rows (131 samples in dataset). I have gone back to my dataset on MassIVE, and can successfully find more than 4 files using the filenames I list in my ReDU metadata, so this is not due to typos in the file name. Any idea what's causing this? We use ReDU a lot in the lab, so I definitely want to contribute back!

mwang87 commented 2 years ago

do you have same filename in different folders? That makes the system confused.

mccall-lab-OU commented 2 years ago

I checked, and only 3 files with the same file names are in two folders. The rest of the missing files aren't...