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mwernerds / trajcomp

Trajectory Computing Library
GNU General Public License v3.0
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ERROR: Installation messages in R #3

Closed rowantoday closed 7 years ago

rowantoday commented 8 years ago

hello,Martin, I get an error when installing TRACLUS. I have installed RTools in my computer. I can`t solve this problems,can you help me? This is the session info: sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)

locale: [1] LC_COLLATE=Chinese (Simplified)_China.936 LC_CTYPE=Chinese (Simplified)_China.936
[3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.936

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] tools_3.3.1

This is the message stuff I get when installing trajcomp_0.2.tar.gz install.packages("D:/RPackage/trajcomp_0.2.tar.gz", repos = NULL, type = "source")

*\ arch - i386 c:/Rtools/mingw_32/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o c:/Rtools/mingw_32/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c interrupt.cpp -o interrupt.o c:/Rtools/mingw_32/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c public_api.cpp -o public_api.o In file included from public_api.cpp:19:0: ./trajcomp/trajcomp_traclus.hpp:306:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]

pragma omp parallel for

^ ./trajcomp/trajcomp_traclus.hpp:309:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]

pragma omp critical

^ ./trajcomp/trajcomp_traclus.hpp:315:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]

pragma omp critical

^ In file included from public_api.cpp:31:0: persistence.hpp: In function 'void persistence::print_curve(persistence::Curve&)': persistence.hpp:82:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < c.size(); i++){ ^ persistence.hpp: In function 'persistence::Curve persistence::traj_to_curve(const std::vectorstd::vector&)': persistence.hpp:97:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < t.size(); ++i){ ^ persistence.hpp:99:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i == 0 || i == t.size()-1){ ^ persistence.hpp: In function 'persistence::Extrema persistence::extrema(const Curve&)': persistence.hpp:148:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 1; i < curve.size(); ++i){ ^ In file included from public_api.cpp:31:0: persistence.hpp: In function 'persistence::Curve persistence::betaPruning(const std::vectorpersistence::Bar&, const Curve&, double)': persistence.hpp:227:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(b.min != 0 && b.min != end_p ){ ^ persistence.hpp:230:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(b.max != 0 && b.max != end_p ){ ^ persistence.hpp: In function 'persistence::Result persistence::PersistenceAlg(const Curve&, double, int)': persistence.hpp:263:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < comps.size(); ++i){ ^ persistence.hpp:310:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((curve[l].val < curve[r].val || r == curve.size()) && l != -1 ){ ^ persistence.hpp:321:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x == curve.size()){ ^ persistence.hpp: In function 'persistence::Curve persistence::prune_curve_dist(const Curve&, double)': persistence.hpp:389:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 1; i < curve.size()-1; ++i){ ^ persistence.hpp: In function 'persistence::Curve persistence::prune_curve_dist_to_segment(const Curve&, double)': persistence.hpp:418:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 1; i < curve.size()-1; ++i){ ^ persistence.hpp: In function 'void persistence::recalc_angles_inplace(persistence::Curve&)': persistence.hpp:437:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < curve.size(); ++i){ ^ persistence.hpp:439:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i == 0 || i == curve.size()-1){ ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_curve(Rcpp::NumericMatrix)': persistence.hpp:512:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_extrema(Rcpp::NumericMatrix)': persistence.hpp:527:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_bars(Rcpp::NumericMatrix, Rcpp::NumericVector)': persistence.hpp:546:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericMatrix persistence_pruned(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:565:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp:573:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < p_result.pruned.size(); i++){ ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_comps(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:592:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.size(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_multires_index(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:611:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericMatrix PersistenceMRS(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:629:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp:645:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < p_result.size(); i++){ ^ persistence.hpp: In function 'Rcpp::NumericMatrix PersistenceSDS(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:668:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp:677:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < p_result.size(); i++){ ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_test_bars(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:696:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.size(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_test_comps(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:714:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.size(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp: In function 'Settings& getSettings(int)': public_api.cpp:38:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i<0 || i >= gSettings.size()) ^ public_api.cpp: In function 'std::string encode_globaldirection(std::vectorstd::vector, char, std::size_t)': public_api.cpp:64:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(step == numChar) step -= numChar; ^ public_api.cpp: In function 'std::string encode_localdirection(std::vectorstd::vector, char, std::size_t)': public_api.cpp:86:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(step == numChar) step -= numChar; ^ public_api.cpp: In function 'std::string encode_length(std::vectorstd::vector, double, char, std::size_t)': public_api.cpp:102:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < traj.size()-1; i++){ ^ public_api.cpp:118:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (step >= numChar) step = numChar-1; ^ public_api.cpp: In function 'std::string encode_globaldirectionFSP(std::vectorstd::vector, char, std::size_t)': public_api.cpp:135:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(step == numChar) step -= numChar; ^ public_api.cpp: In function 'std::string encode_lengthFSP(std::vectorstd::vector, double, char, std::size_t)': public_api.cpp:151:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < traj.size()-1; i++){ ^ public_api.cpp:167:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (step >= numChar) step = numChar-1; ^ public_api.cpp: In function 'SEXPREC* trajectory_distances(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:437:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < S.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:439:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:447:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::NumericVector trajectory_distance_vector(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:490:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:496:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i <= S.nrow(); i++)
^ public_api.cpp:498:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i == S.nrow()|| std::isnan(S(i,0))) // the last or any nan ^ public_api.cpp:503:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::String encode(Rcpp::NumericMatrix, std::string)': public_api.cpp:545:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp: In function 'Rcpp::NumericVector distance_vector_ddply(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:568:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < Q.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:571:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:580:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::CharacterVector getDistanceNames(int)': public_api.cpp:624:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i<s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::NumericMatrix DouglasPeucker(Rcpp::NumericMatrix, double)': public_api.cpp:652:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < S.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:660:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < res.size(); i++){ ^ public_api.cpp: In function 'Rcpp::NumericMatrix DouglasPeuckerWeights(Rcpp::NumericMatrix, double)': public_api.cpp:680:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < S.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:688:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < res.size(); i++){ ^ public_api.cpp: In function 'Rcpp::DataFrame cpp_traclus(Rcpp::NumericMatrix, double, int)': public_api.cpp:822:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < TrajectoryDB.nrow(); i++) //@todo: remove copy by an adapter class ^ public_api.cpp: In function 'Rcpp::NumericVector trajectory_distance_vector(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:524:49: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] for (auto p:distributor) distances[p] = d; ^ c:/Rtools/mingw_32/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c redsvd.cpp -o redsvd.o c:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o trajcomp.dll tmp.def RcppExports.o interrupt.o public_api.o redsvd.o -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/R/R-3.3.1/bin/i386 -lR installing to D:/R/R-3.3.1/library/trajcomp/libs/i386

*\ arch - x64 c:/Rtools/mingw_64/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o c:/Rtools/mingw_64/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c interrupt.cpp -o interrupt.o c:/Rtools/mingw_64/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c public_api.cpp -o public_api.o In file included from public_api.cpp:19:0: ./trajcomp/trajcomp_traclus.hpp:306:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]

pragma omp parallel for

^ ./trajcomp/trajcomp_traclus.hpp:309:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]

pragma omp critical

^ ./trajcomp/trajcomp_traclus.hpp:315:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]

pragma omp critical

^ In file included from public_api.cpp:31:0: persistence.hpp: In function 'void persistence::print_curve(persistence::Curve&)': persistence.hpp:82:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < c.size(); i++){ ^ persistence.hpp: In function 'persistence::Curve persistence::traj_to_curve(const std::vectorstd::vector&)': persistence.hpp:97:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < t.size(); ++i){ ^ persistence.hpp:99:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i == 0 || i == t.size()-1){ ^ persistence.hpp: In function 'persistence::Extrema persistence::extrema(const Curve&)': persistence.hpp:148:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 1; i < curve.size(); ++i){ ^ In file included from public_api.cpp:31:0: persistence.hpp: In function 'persistence::Curve persistence::betaPruning(const std::vectorpersistence::Bar&, const Curve&, double)': persistence.hpp:227:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(b.min != 0 && b.min != end_p ){ ^ persistence.hpp:230:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(b.max != 0 && b.max != end_p ){ ^ persistence.hpp: In function 'persistence::Result persistence::PersistenceAlg(const Curve&, double, int)': persistence.hpp:263:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < comps.size(); ++i){ ^ persistence.hpp:310:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((curve[l].val < curve[r].val || r == curve.size()) && l != -1 ){ ^ persistence.hpp:321:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x == curve.size()){ ^ persistence.hpp: In function 'persistence::Curve persistence::prune_curve_dist(const Curve&, double)': persistence.hpp:389:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 1; i < curve.size()-1; ++i){ ^ persistence.hpp: In function 'persistence::Curve persistence::prune_curve_dist_to_segment(const Curve&, double)': persistence.hpp:418:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 1; i < curve.size()-1; ++i){ ^ persistence.hpp: In function 'void persistence::recalc_angles_inplace(persistence::Curve&)': persistence.hpp:437:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < curve.size(); ++i){ ^ persistence.hpp:439:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i == 0 || i == curve.size()-1){ ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_curve(Rcpp::NumericMatrix)': persistence.hpp:512:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_extrema(Rcpp::NumericMatrix)': persistence.hpp:527:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_bars(Rcpp::NumericMatrix, Rcpp::NumericVector)': persistence.hpp:546:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericMatrix persistence_pruned(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:565:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp:573:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < p_result.pruned.size(); i++){ ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_comps(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:592:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.size(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_multires_index(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:611:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericMatrix PersistenceMRS(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:629:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp:645:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < p_result.size(); i++){ ^ persistence.hpp: In function 'Rcpp::NumericMatrix PersistenceSDS(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:668:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp:677:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < p_result.size(); i++){ ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_test_bars(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:696:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.size(); i++) //@todo: remove copy by an adapter class @Martin ^ persistence.hpp: In function 'Rcpp::NumericVector persistence_test_comps(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector)': persistence.hpp:714:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.size(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp: In function 'Settings& getSettings(int)': public_api.cpp:38:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i<0 || i >= gSettings.size()) ^ public_api.cpp: In function 'std::string encode_globaldirection(std::vectorstd::vector, char, std::size_t)': public_api.cpp:64:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(step == numChar) step -= numChar; ^ public_api.cpp: In function 'std::string encode_localdirection(std::vectorstd::vector, char, std::size_t)': public_api.cpp:86:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(step == numChar) step -= numChar; ^ public_api.cpp: In function 'std::string encode_length(std::vectorstd::vector, double, char, std::size_t)': public_api.cpp:102:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < traj.size()-1; i++){ ^ public_api.cpp:118:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (step >= numChar) step = numChar-1; ^ public_api.cpp: In function 'std::string encode_globaldirectionFSP(std::vectorstd::vector, char, std::size_t)': public_api.cpp:135:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(step == numChar) step -= numChar; ^ public_api.cpp: In function 'std::string encode_lengthFSP(std::vectorstd::vector, double, char, std::size_t)': public_api.cpp:151:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < traj.size()-1; i++){ ^ public_api.cpp:167:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (step >= numChar) step = numChar-1; ^ public_api.cpp: In function 'SEXPREC* trajectory_distances(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:437:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < S.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:439:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:447:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::NumericVector trajectory_distance_vector(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:490:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:496:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i <= S.nrow(); i++)
^ public_api.cpp:498:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i == S.nrow()|| std::isnan(S(i,0))) // the last or any nan ^ public_api.cpp:503:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::String encode(Rcpp::NumericMatrix, std::string)': public_api.cpp:545:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp: In function 'Rcpp::NumericVector distance_vector_ddply(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:568:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < Q.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:571:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < T.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:580:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::CharacterVector getDistanceNames(int)': public_api.cpp:624:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i<s.distances.size(); i++){ ^ public_api.cpp: In function 'Rcpp::NumericMatrix DouglasPeucker(Rcpp::NumericMatrix, double)': public_api.cpp:652:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < S.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:660:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < res.size(); i++){ ^ public_api.cpp: In function 'Rcpp::NumericMatrix DouglasPeuckerWeights(Rcpp::NumericMatrix, double)': public_api.cpp:680:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < S.nrow(); i++) //@todo: remove copy by an adapter class @Martin ^ public_api.cpp:688:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < res.size(); i++){ ^ public_api.cpp: In function 'Rcpp::DataFrame cpp_traclus(Rcpp::NumericMatrix, double, int)': public_api.cpp:822:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (size_t i=0; i < TrajectoryDB.nrow(); i++) //@todo: remove copy by an adapter class ^ public_api.cpp: In function 'Rcpp::NumericVector trajectory_distance_vector(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)': public_api.cpp:524:49: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] for (auto p:distributor) distances[p] = d; ^ c:/Rtools/mingw_64/bin/g++ -std=c++0x -I"D:/R/R-3.3.1/include" -DNDEBUG "-I." -I"D:/R/R-3.3.1/library/Rcpp/include" -I"D:/R/R-3.3.1/library/BH/include" -I"D:/R/R-3.3.1/library/RcppEigen/include" -I"D:/R/R-3.3.1/library/RcppProgress/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c redsvd.cpp -o redsvd.o c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o trajcomp.dll tmp.def RcppExports.o interrupt.o public_api.o redsvd.o -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/R/R-3.3.1/bin/x64 -lR installing to D:/R/R-3.3.1/library/trajcomp/libs/x64 * R * data * inst * preparing package for lazy loading \ help Warning: /tmp/RtmpLGjw5s/Rbuild1ac13fe42a44/trajcomp/man/trajcomp-package.Rd:27: All text must be in a section Warning: /tmp/RtmpLGjw5s/Rbuild1ac13fe42a44/trajcomp/man/trajcomp-package.Rd:28: All text must be in a section * installing help indices * building package indices * installing vignettes \ testing if installed package can be loaded * arch - i386 *\ arch - x64

mwernerds commented 7 years ago

The last line tells that despite a lot of warnings everything is working. Can you run library(trajcomp)? Then enter trajcomp:: and push TAB two times, it should show a lot of functions.