mwpennell geiger-v2 issues

mwpennell / geiger-v2

A suite of methods and models for studying evolutionary radiations

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issues

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Fixed NA error checking in fitDiscrete

#47 clinte14 opened 1 year ago
0
Try an If statement?

#46 Yva-Eline opened 1 year ago
0
Update traits.R

#45 jtvanleuven opened 1 year ago
0
2-fold improvement in efficiency for OU VCV

#44 stilianoslouca opened 2 years ago
0
testing phylo class with 'is.phylo' instead of '=='

#43 LunaSare closed 2 years ago
1
install.packages("geiger") error

#42 1457634627 closed 1 year ago
6
name.check is not case sensitive!

#41 achazhardenberg closed 4 years ago
2
MEDUSA results over a distribution of trees?

#40 LauravanHolstein closed 4 years ago
5
geiger considered orphaned by CRAN

#39 marlonecobos closed 4 years ago
3
Maintainer of geiger?

#38 richelbilderbeek closed 4 years ago
3
fitContinuousMCMC: Error in solve.default(C): Lapack routine dgesv:

#37 jjsolano closed 4 years ago
4
Error in .check.tree(tree,...) for fitDiscrete

#36 flashton2003 closed 5 years ago
3
Update 2.0.6.1

#35 jonchang closed 5 years ago
0
Update CITATION

#34 josephwb closed 4 years ago
0
treePL now an option for congruify.phylo()

#33 bomeara closed 7 years ago
0
Fixes for non-ultrametric trees

#32 dwbapst closed 7 years ago
0
dtt with discrete characters error

#31 IanGBrennan closed 4 years ago
2
fitDiscrete - fn does not return complete Q matrix

#30 Caetanods closed 4 years ago
2
TCS

#29 nomihadar closed 8 years ago
1
MEDUSA issue with 'old' trees

#28 A-Swafford closed 8 years ago
3
gbresolve

#27 nomihadar closed 8 years ago
0
fitDiscrete optimization code is confusing

#26 lukejharmon closed 4 years ago
1
fitContinuous - input argument names and documentation names are very confusing

#25 lukejharmon closed 4 years ago
1
congruify with r8s

#24 bomeara closed 7 years ago
1
congruify.phylo help file has strange characters

#23 lukejharmon closed 4 years ago
1
fitContinuousMCMC Early Burst model fails

#22 SimonGreenhill closed 4 years ago
3
rescale.phylo returns NaN under "delta" model for some trees

#21 dwbapst closed 4 years ago
1
early burst is given incorrect bounds in fitContinuous for non-ultrametric trees due to use of branching.times

#20 dwbapst closed 7 years ago
0
sim.bdtree does not check correct parameter use

#19 richelbilderbeek closed 4 years ago
3
Medusalowbound

#18 josephwb closed 8 years ago
0
fix to issue-16

#17 josephwb closed 8 years ago
0
fitDiscrete fails when traits are, um, actually discrete?

#16 cboettig closed 8 years ago
2
weird behavior when you feed discrete characters to dtt

#15 lukejharmon closed 4 years ago
0
Add support for vector of root values in sim.char()

#14 Caetanods closed 4 years ago
0
MEDUSA parameter estimation (?) error

#13 BenjaminBlanchard closed 4 years ago
27
bounds on alpha in fitContinuous(model = "OU")

#12 davharris closed 9 years ago
2
problem with analysis output with aov.phylo (geiger)

#11 mstrelin closed 9 years ago
2
ratematrix returns singular matrix without warning

#10 Caetanods closed 4 years ago
0
improve drop.extinct

#9 josephwb closed 10 years ago
4
Medusa requires cladewise trees

#8 uyedaj closed 4 years ago
1
Medusa breaks when too many shifts are added

#7 uyedaj opened 10 years ago
0
fitDiscrete does NOT fail when there are NAs

#6 lukejharmon opened 10 years ago
0
Build is broken

#5 richfitz closed 10 years ago
16
fitDiscrete fails when traits have character state 0

#4 lukejharmon opened 10 years ago
0
output of aov.phylo is confusing to users

#3 lukejharmon closed 9 years ago
0
Update changelog to reflect changes from geiger 1.3

#2 cboettig closed 9 years ago
2
Add `simulate.gfit()` and `update.gfit()` S3 methods

#1 cboettig closed 4 years ago
1