nanoporetech Pore-C-Snakemake issues

nanoporetech / Pore-C-Snakemake

Other

33 stars 15 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Pore-C-Snakemake test run

#53 molecule53 closed 1 year ago
3
Output files

#52 Oksanak22 opened 1 year ago
0
Add deprecation notice

#51 eharr closed 1 year ago
0
Issue with the concertation .bam files to .bedpe

#50 Oksanak22 opened 1 year ago
0
Pandas error: Exception("name 'direct_long_range' is not defined")

#49 vmurigneu opened 1 year ago
0
numpy attribute error

#48 ulloaa opened 1 year ago
8
bash: -c: line 1: syntax error: unexpected end of file

#47 lurebgi closed 1 year ago
0
BWA-SW parameters.

#46 Oksanak22 opened 1 year ago
0
Error in rule add_refgenome

#45 rb520826 opened 1 year ago
0
Missing output files

#44 Oksanak22 opened 1 year ago
0
Execute the workflow

#43 Oksanak22 opened 1 year ago
0
Phased_vcfs.tsv

#42 Oksanak22 opened 1 year ago
0
Possible Pyarrow Bug

#41 wenluo711 opened 2 years ago
4
what configurations do I need to change?

#40 mfazel opened 2 years ago
5
create_hic sun.reflect.Reflection.getCallerClass

#39 OZTaekOppa opened 2 years ago
0
Scaffolding not working

#38 fergsc opened 2 years ago
0
Wrong installation Guide env name

#37 stasys-hub opened 2 years ago
1
Documentation and config errors

#36 stasys-hub opened 2 years ago
0
CreateCondaEnvironmentException upon invoking snakemake in pore-c-snakemake environment

#35 gchchung opened 2 years ago
2
fix a problem with aws-sdk-cpp by downgrading the package

#34 aallahyar closed 2 years ago
0
Running on HPC with no external access

#33 jonwright99 closed 2 years ago
0
Error in rule haplotag

#32 sadhanagaddam3 opened 2 years ago
0
Q: Using custom `config` for different datasets

#31 sklages closed 2 years ago
1
rule assign_fragments crashes due to pyarrow problem

#30 Mittmich opened 2 years ago
1
Missing input files for rule all:

#29 GeoMicroSoares opened 2 years ago
5
Error in rule virtual_digest

#28 MichelMoser opened 2 years ago
1
error haplotag rule

#27 eedhaene opened 3 years ago
0
pandas.core.computation.ops.UndefinedVariableError

#26 sarah872 opened 3 years ago
0
Paired_end

#25 hung-th opened 3 years ago
0
cut off for short/long range cis contacts

#24 Henrikkoe opened 3 years ago
0
Difference between direct vs. indirect contacts

#23 jychoilab opened 3 years ago
1
List of commands to avoid using snakemake

#22 biofilos opened 3 years ago
0
SyntaxError in scripts/reformat_bam.py line 17

#21 jazberna1 closed 3 years ago
1
error in download_juicebox (missing directory)

#20 biofilos opened 3 years ago
2
Fix conda channel order

#19 eharr closed 3 years ago
0
Issue with pyarrow

#18 gf777 closed 3 years ago
2
Minimum number of contacts for pore-C analysis

#17 antarikshtyagi opened 3 years ago
3
Test run fails to execute correctly

#16 bistace opened 3 years ago
7
Fix broken link

#15 eharr closed 3 years ago
0
Merge v0.2.0

#14 eharr closed 3 years ago
0
removed manual poreC install need

#13 nhartwic closed 3 years ago
5
mapq filter

#12 biofilos opened 3 years ago
3
[lh3/bwa] bwa bwasw crashed with the error '[vfprintf(stdout)] Value too large for defined data type'

#11 dexon9109 closed 3 years ago
2
RuntimeError: Decompression 'SNAPPY' not available

#10 iReprogram closed 3 years ago
2
Execution on slurm scheduler

#9 antarikshtyagi closed 4 years ago
2
Snakemake error

#8 erbon7 closed 3 years ago
6
Extracting info from .read.paraquet

#7 callumparr closed 3 years ago
2
pipeline crashes - snappy not installed

#6 dikkeaap closed 4 years ago
2
Generation of mandatory 3D-DNA input files

#5 bistace closed 3 years ago
3
issue with hic text file conversion

#4 antarikshtyagi closed 3 years ago
3