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nanoporetech
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megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
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Megalodon
#356
duhuipeng
opened
4 months ago
0
megalodon
#355
duhuipeng
closed
4 months ago
0
the Algorithm Details about Megalodon
#354
xieyy46
opened
10 months ago
0
Could not build wheels for megalodon
#353
vzupan3
opened
11 months ago
3
ERROR: Guppy server initialization failed. "crashpad_handler not supported on this platform."
#352
Wshengquan
opened
1 year ago
0
CUDA error at /builds/ofan/ont_core_cpp/ont_core/common/cuda_common.cpp:232: CUDA_ERROR_INVALID_DEVICE
#351
Modernism-01
opened
1 year ago
0
Megalodon does not process "raw" reads
#350
drdna
opened
1 year ago
0
No fast5_out option in Guppy 6.5.7
#349
zjzace
opened
1 year ago
2
srun: error: node26: task 0: Segmentation fault (core dumped)
#348
Fadwa7
opened
1 year ago
0
No ont_guppy
#347
weishwu
closed
1 year ago
1
Models for 6ma methylations already coming?
#346
yqi19
opened
1 year ago
1
Deprecate
#345
marcus1487
closed
1 year ago
0
numpy.AxisError: axis 1 is out of bounds for array of dimension 1
#344
jazsakr
opened
1 year ago
2
INSTALLATION ERROR: Need to install numpy before megalodon installation.
#343
rayljc
closed
1 year ago
5
Segmentation Fault
#342
SimonChen1997
opened
1 year ago
2
Guppy version string does not match expected pattern
#341
alexandergfuji
opened
1 year ago
1
AttributeError: 'MegaError' object has no attribute 'format'
#340
kewei2019
opened
1 year ago
0
reads connection error
#339
Bessem06
opened
1 year ago
0
Problem with megalodon
#338
Bessem06
closed
1 year ago
1
trouble reading remora models
#337
stephrom
opened
1 year ago
0
pod5 migration for methylation
#336
colindaven
closed
1 year ago
1
"megalodon_extras modified_bases create_motif_bed" does not return all of the positions
#335
ziczhang
opened
1 year ago
0
how to caculate the Methylation Frequency with silde window method
#334
zhoudreames
closed
1 year ago
3
Guppy server initialization failed
#333
ZabalaAitor
opened
1 year ago
2
Guppy initialization fails, unexplicably
#332
cvermeulen88
opened
1 year ago
1
Generating Fasta in place of FASTQ
#331
fazeel15
opened
1 year ago
0
Filter fail reads with Megalodon vs Remora
#330
Coracollar
opened
1 year ago
0
How to convert mod_mapping.bam to bed file
#329
JeremyQuo
opened
1 year ago
3
What model should be used for 5mC methylation calling on R9.4.1/R10.4.1?
#328
PanZiwei
closed
1 year ago
1
Megalodon not producing any output, sitting idle
#327
bastian-wur
opened
1 year ago
2
How to Maximize 5hmC Calling Efficiency
#326
andrew-galbraith
opened
1 year ago
2
ML:B: tag threshold
#325
Yijun-Tian
closed
1 year ago
5
Setting up input for epigenetic modification detection
#324
GianlucaMattei
opened
2 years ago
1
Variant phasing on 2.5.0
#323
gokalpyildirir
closed
1 year ago
1
the results about basecalls of megalodon
#322
Flower9618
closed
1 year ago
1
Getting extra modification files without rerunning megaldon
#321
Coracollar
closed
1 year ago
2
Different genomic coordinates between mappings.bam and mod_mappings.bam
#320
DidiCi
closed
1 year ago
1
running megalodon with all context DNA methylation models
#319
AlineMuyle
opened
2 years ago
3
the difference between running megaodon with CPU and GPU?
#318
kir1to455
closed
2 years ago
2
using custom remora models with megalodon
#317
jorisbalc
closed
2 years ago
1
sqlite3.OperationalError: disk I/O error
#316
xinkaitong
closed
2 years ago
3
Unsupported number of states
#315
mmahlke
opened
2 years ago
3
Megalodon spawns 26 processes despite specifying 16 processes at runtime
#314
bbyrns
opened
2 years ago
1
Much higher reads quality by megalodon than Guppy
#313
yanchunzhang
opened
2 years ago
2
No reads quality in the result bam files
#312
yanchunzhang
closed
2 years ago
1
Guppy server initialization failed
#311
jorisbalc
closed
2 years ago
1
multiple input folders ?
#310
colindaven
closed
2 years ago
2
RROR: Guppy server initialization failed. See guppy logs in [--output-directory] for more details.
#309
fire-activate
closed
2 years ago
5
basecall_service::BasecallClient::worker_loop: Connection error.
#308
phdegnan
closed
2 years ago
2
Generate mod_mapping with both options
#307
Yijun-Tian
closed
2 years ago
3
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