nanoporetech pipeline-pinfish-analysis issues - Githubissues

nanoporetech / pipeline-pinfish-analysis

Pipeline for annotating genomes using long read transcriptomics data with pinfish

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Error running pipeline SIGSEGV panic

#16 kyle-kroll closed 3 years ago
2
Pipeline stuck on cluster_gff for big input files

#15 MilesLuca closed 3 years ago
1
Warning messages while running the pipeline

#14 Dan-Lt closed 3 years ago
1
failed running the pipeline

#13 Dan-Lt closed 3 years ago
4
Substituting pinfish for tools with mac binaries

#12 T-Northcutt closed 3 years ago
0
Issue with using Racon

#11 charlottewright closed 4 years ago
3
printing error with plot_gffcmp_stats.py

#10 splaisan closed 5 years ago
1
Number of alternative splices events detected by the pipeline is significantly less than the annotation file

#9 weir12 closed 5 years ago
1
Adding gene annotations in spliced_bam2gff

#8 mvemulap closed 5 years ago
2
ggplot2 code for your plots

#7 splaisan closed 5 years ago
2
clustering step seems to ignore reasonable clusters

#6 nhartwic closed 5 years ago
1
Racon error

#5 qh1134269149 closed 5 years ago
3
Config file is not valid

#4 KaushikPanda1 closed 5 years ago
0
Snakemake stops at bam2gff

#3 callumparr closed 5 years ago
4
Only makes minimap2 index and then finishes

#2 callumparr closed 5 years ago
2
`too many open files` in clustering

#1 palfalvi closed 6 years ago
3