nanoporetech taiyaki issues

nanoporetech / taiyaki

Training models for basecalling Oxford Nanopore reads

https://nanoporetech.com/

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issues

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trim_start and trim_end

#121 Flower9618 opened 2 years ago
0
"reference seqeunces contain ambiguous bases not found in the provided alphabet and will be skipped."

#120 swZhang1 opened 2 years ago
1
Bump pip from 20.2.4 to 21.1

#119 dependabot[bot] opened 2 years ago
0
question about 'flipflop_remap'

#118 Flower9618 opened 3 years ago
2
mixed bases allowable in reference.fasta?

#117 niphilli closed 3 years ago
1
Error during training

#116 gmoneyomics closed 3 years ago
0
Error with guppy using a new model trained with taiyaki

#115 jlaroche opened 3 years ago
2
Does mGru_flipflop_model_r941_DNA.checkpoint exist?

#114 Linkrw12 closed 3 years ago
4
Bump py from 1.9.0 to 1.10.0

#113 dependabot[bot] opened 3 years ago
0
Distributed multiple GPUs launch failed

#112 weir12 closed 3 years ago
1
Scripts to extract mod info from hdf5 files

#111 callumparr opened 3 years ago
2
Bump pygments from 2.6.1 to 2.7.4

#110 dependabot[bot] opened 3 years ago
0
prepare_mapped_reads.py bugfix

#109 jackwadden opened 3 years ago
0
kkk

#108 Ballad closed 3 years ago
0
Issue running prepare_mapped_reads.py

#107 SanglierA opened 3 years ago
4
Fix PyTorch links for Python>=3.8

#106 VarIr opened 3 years ago
0
GPU accelerated prepare_mapped_reads.py?

#105 Linkrw12 closed 3 years ago
2
Installation issues

#104 addyblanch opened 3 years ago
0
Bug: naming modified bases with lowercase characters

#103 marcpaga closed 3 years ago
1
Training a different architecture: ModuleNotFoundError: No module named 'netmodule'

#102 organic-chemistry closed 3 years ago
4
How to ouptut modified base with megalodon

#101 organic-chemistry closed 4 years ago
1
Guppy version?

#100 dikkeaap closed 3 years ago
1
AssertionError: Input not finite

#99 dikkeaap opened 4 years ago
2
Mapped Read File == resquiggle?

#98 pabloacera opened 4 years ago
1
Using Fast CTC Decode with Taiyaki

#97 prtksngh closed 4 years ago
3
Predicting squiggles with taiyaki

#96 nemitheasura closed 3 years ago
3
Large number of reads cannot mapped successfully after prepare_mapped_reads.py

#95 duolinwang opened 4 years ago
0
AttributeError: 'GRU' object has no attribute '_flat_weights_names'

#94 jannessauer closed 3 years ago
3
Taiyaki train

#93 marcpaga closed 3 years ago
1
Approximate time to finish prepare_mapped_reads

#92 marcpaga closed 4 years ago
4
Evaluation Method

#91 techsavy12 closed 4 years ago
2
Restarting from a checkpoint

#90 techsavy12 closed 3 years ago
3
error with newly created checkpoint file

#89 DeanH10 opened 4 years ago
4
Not enough chunks passing the filters during training

#88 katjahauser opened 4 years ago
2
Preparation of ab initio training set - how to choose corresponding ground truth segments

#87 katjahauser closed 4 years ago
2
Per Read Modified Base Reference

#86 techsavy12 closed 4 years ago
3
CPU

#85 techsavy12 opened 4 years ago
1
Low coverage directly adjacent to adapter (polyA)

#84 Wildstrubu closed 3 years ago
3
sequence length for training

#83 DeanH10 closed 4 years ago
1
Begginer Questions

#82 techsavy12 closed 4 years ago
2
Revert "Revert "Fix upper limit on Biopython (support py3.5)""

#81 aevansNP closed 4 years ago
0
Revert "Fix upper limit on Biopython (support py3.5)"

#80 aevansNP closed 4 years ago
0
Fix upper limit on Biopython (support py3.5)

#79 aevansNP closed 4 years ago
0
Restarting from previous checkpoint

#78 mbhall88 closed 3 years ago
0
R10 training models

#77 nbeckloff closed 3 years ago
3
Pretrained model for RNA?

#76 HirokiU-RCAST opened 4 years ago
1
Stop condition for training

#75 mbhall88 closed 4 years ago
3
Add support for CUDA 10.1 environment

#74 nodrogluap opened 4 years ago
0
Speeding up prepare_mapped_reads

#73 mbhall88 closed 4 years ago
8
Where to get "pretrained" model?

#72 sequinstandards closed 4 years ago
1