napari / napari-animation

A napari plugin for making animations
https://napari.github.io/napari-animation/
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animation fails to run with a spot layer #207

Closed sebherbert closed 3 months ago

sebherbert commented 4 months ago

Hi all, hi @guiwitz,

We've tried to create an animation containing some spots that were detected but ended up with this error. Would you have some idea what the problem could be and if we could fix it on our side maybe? napari_animation_spot_fail

Packages installed:

python 3.11.7 napari 0.4.18 pypi_0 pypi napari-animation 0.0.7 pypi_0 pypi napari-console 0.0.9 pypi_0 pypi napari-crop 0.1.9 pypi_0 pypi napari-nd-cropper 0.1.3 pypi_0 pypi napari-plugin-engine 0.2.0 pypi_0 pypi napari-plugin-manager 0.1.0a2 pypi_0 pypi napari-roi 0.1.8 pypi_0 pypi napari-svg 0.1.10 pypi_0 pypi napari-tools-menu 0.1.19 pypi_0 pypi napari-workflows 0.2.10 pypi_0 pypi

Thanks! Sebastien

psobolewskiPhD commented 4 months ago

I think this should have been fixed by: https://github.com/napari/napari-animation/pull/181

We just haven't made a release.

If you're comfortable testing, can you try to installing the main branch from here via: python -m pip install "git+https://github.com/napari/napari-animation.git

If that doesn't work then we'll need a bit more info about the layers or ideally some code to reproduce.

sebherbert commented 4 months ago

Thanks for the quick reply and suggestion. We'll give it a try as soon as possible!

psobolewskiPhD commented 4 months ago

Thanks, I will sort out whats blocking release in the 2nd half of this week -- we had some administrative/permissions blockers, that hopefully are resolved.

psobolewskiPhD commented 3 months ago

Sorry for the delay! 0.0.8 should be out now: https://pypi.org/project/napari-animation/

Hopefully it fixes your issue. If not, re-open!

sebherbert commented 3 months ago

Sorry we didn't have the time to retest either... Thanks, I'm looking forward to give it a try!

=> (late) Edit for the test: All good, thanks for the fix!