naturalis barcode-constrained-phylogeny issues

naturalis / barcode-constrained-phylogeny

Pipeline for building topologically-constrained phylogenies from DNA barcode data

https://naturalis.github.io/barcode-constrained-phylogeny/

Apache License 2.0

2 stars 3 forks source link

issues

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Not enough outgroups in geophylogeny

#116 rvosa opened 2 months ago
0
Broken BCDM

#115 rvosa opened 2 months ago
0
Assess ITS potential

#114 rvosa opened 4 months ago
0
Process plant barcodes

#113 rvosa opened 4 months ago
0
Software sustainability improvements

#112 rvosa opened 4 months ago
0
Odonata

#111 rvosa closed 5 months ago
0
CI/CD and testing

#110 rvosa opened 5 months ago
0
Setup Lepidoptera

#109 rvosa opened 5 months ago
1
Better file handling

#108 rvosa opened 5 months ago
0
Provenance tracking, detecting errors

#107 rvosa opened 5 months ago
0
Software publishing and visibility

#106 rvosa opened 5 months ago
0
Attractive visualization

#105 rvosa opened 5 months ago
0
Variable input species sets

#104 rvosa opened 5 months ago
0
Periodic, automatically scheduled runs

#103 rvosa opened 5 months ago
0
FAIR, versioned releases of result trees

#102 rvosa opened 5 months ago
0
Scalability of large backbone grafting

#101 rvosa opened 5 months ago
0
Scalability of large subsets

#100 rvosa opened 5 months ago
2
Dynamic parallelization of rule execution

#99 rvosa opened 5 months ago
0
Reproducibility of conda environments

#98 rvosa opened 5 months ago
0
Check extreme outliers

#97 rvosa opened 5 months ago
0
extinct taxa

#96 rvosa closed 5 months ago
0
family_fasta refinement needed

#95 rvosa closed 5 months ago
1
Update README.md

#94 rvosa closed 5 months ago
1
Non-flush alignments under certain conditions

#93 rvosa opened 5 months ago
1
Update makeblastdb.sh

#92 rvosa closed 5 months ago
1
nucraw updates

#91 rvosa closed 5 months ago
1
results/fasta/family folder missing

#90 zahrag closed 5 months ago
2
DNA barcode sequence field in BOLD tsv

#89 zahrag closed 5 months ago
4
create_database.py nucraw to nuc

#88 AnnemiekeSchonthaler closed 5 months ago
2
Incongruencies in main README

#87 JWesseling closed 5 months ago
2
makeblastdb.sh shell script not portable

#86 JWesseling closed 5 months ago
8
Curate input data package

#85 rvosa closed 5 months ago
2
Create v1.1.0

#84 rvosa closed 6 months ago
3
create_database produces inconsistencies

#83 rvosa closed 6 months ago
1
Outgroup selection with blast

#82 rvosa closed 7 months ago
3
OpenToL 'broken' taxa

#81 rvosa closed 6 months ago
1
Add date/time stamp to log messages

#80 rvosa closed 6 months ago
3
Roadmap next release

#79 rvosa opened 8 months ago
0
Submit to WorkflowHub

#78 rvosa closed 8 months ago
1
Picking exemplars

#77 rvosa closed 7 months ago
3
Reroot unrooted raxml subtree

#76 rvosa closed 8 months ago
1
RAxML placement and branch length optimization

#75 rvosa closed 7 months ago
5
Additional indexes needed

#74 rvosa closed 8 months ago
0
Data thinning

#73 rvosa closed 9 months ago
0
Incompatible dependency graphs across rules

#72 rvosa closed 8 months ago
1
Skip `temporary_database.db` step

#71 rvosa closed 9 months ago
0
Implementation status beyond raxml

#70 rvosa closed 8 months ago
1
Spurious pandas dependency errors

#69 rvosa closed 9 months ago
0
Handling empty FASTA files

#68 rvosa closed 9 months ago
0
hmmalign parameterization

#67 rvosa closed 9 months ago
1