natverse nat.templatebrains issues

natverse / nat.templatebrains

Support for 3D template brains used as targets for image registration

https://natverse.org/nat.templatebrains/

GNU General Public License v3.0

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Suggest Morpho instead of importing it

#52 jefferis closed 1 year ago
0
preparing for CRAN after archival

#51 jefferis closed 1 year ago
0
Feature/fit xform

#50 jefferis closed 2 years ago
0
'~' not expanded when calculating local reg dirs during install

#49 clbarnes closed 2 years ago
8
Automatically fit thin plate splines for a bridging graph.

#48 jefferis opened 3 years ago
1
fix bugs in all_templatebrains

#47 jefferis closed 4 years ago
0
Support for templatebrains that share same physical space

#46 jefferis opened 4 years ago
0
templatebrain constructor does not process origin

#45 jefferis closed 4 years ago
1
Add support for via to shortest_bridging_seq (and xform_brain)

#44 jefferis closed 4 years ago
1
Flexible via specification for xform_brain / shortest_bridging_seq

#43 jefferis closed 4 years ago
1
bridging_graph(reciprocal=F) gives incorrect results

#42 jefferis closed 4 years ago
1
Feature/bridging graph environment

#41 SridharJagannathan closed 2 years ago
2
Fixed issue #39

#40 SridharJagannathan closed 4 years ago
1
print.templatebrain should recycle the unit when it has length 1

#39 jefferis closed 5 years ago
1
Uninformative error from CMTK with kcs20 example

#38 r-shruthi11 closed 5 years ago
6
Allow nat.templatebrains to have backup registrations e.g. for points that fail to transform

#37 jefferis opened 5 years ago
1
Allow non CMTK mirroring registrations

#36 jefferis opened 5 years ago
0
Add function to find all templatebrains

#35 jefferis closed 5 years ago
1
shortest_bridging_seq should complain if template brain does not exist in graph

#34 jefferis closed 6 years ago
0
xform_brain should not try to transform when sample and reference are identical

#33 jefferis closed 6 years ago
1
teach plot3d.templatebrain to work with regtemplate

#32 jefferis closed 8 years ago
0
R CMD check is not running tests

#31 jefferis closed 8 years ago
1
add_reglist should not return anything (visibly)

#30 jefferis closed 8 years ago
0
xform_brain should give better error when sample unknown

#29 jefferis closed 8 years ago
2
fix inversion (swapping) of reglists on disk

#28 jefferis closed 8 years ago
1
cache some aspects of finding registrations

#27 jefferis closed 8 years ago
1
can we teach xform_brain to mirror as well

#26 jefferis opened 8 years ago
6
as.templatebrain.im3d should not need an im3d made from a file

#25 jefferis closed 7 years ago
0
templatebrain constructor should not need all boundingbox/origin etc fields to be specified

#24 jefferis closed 7 years ago
1
xform_brain should tag objects with their space

#23 jefferis closed 8 years ago
6
Reducing alpha of segmented surface template brains slows interactivity

#22 josesho closed 8 years ago
5
xform_brain should work with other registration classes

#21 jefferis closed 8 years ago
3
fix downloading of git repos when no git user has been set

#20 jefferis closed 8 years ago
8
download_reg_repo should ensure that base directory exists

#19 jefferis closed 8 years ago
1
mirror_brain should be able to handle image data

#18 jefferis closed 8 years ago
1
xform_brain should have an option for an additional registrations

#17 jefferis opened 9 years ago
0
xform_brain should not require an explicit target specification for image data

#16 jefferis closed 5 years ago
4
CRAN release of 0.6.1

#15 jefferis closed 9 years ago
1
bug in mirror_brain for non-zero origin

#14 jefferis closed 9 years ago
0
Add doi field to templatebrains object

#13 jdmanton closed 9 years ago
1
add template objects for all brains in the study

#12 jefferis closed 9 years ago
0
xform_brain / bridging_sequence should work for images

#11 jefferis closed 9 years ago
1
Graph search for concatenation of bridges

#10 jdmanton closed 9 years ago
1
Add generic write.landmarks function

#9 jefferis closed 9 years ago
0
write.neurons('file.zip') ignores args including subdir

#8 jefferis closed 9 years ago
0
bridging_sequence docs contain an error re image data

#7 jefferis closed 9 years ago
4
Use rappdirs for storing registrations?

#6 jdmanton closed 9 years ago
3
CRAN release?

#5 jefferis closed 10 years ago
3
setup token for travis children build

#4 jefferis closed 10 years ago
2
store all registrations associated with templatebrain in one directory

#3 jefferis closed 10 years ago
2