issues
search
ncbi
/
cwl-ngs-workflows-cbb
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Other
23
stars
10
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Clarify Public Domain vs OPL license
#88
stain
closed
2 years ago
1
Update ucsc-bedtogenepred-bioconda.yml
#87
leipzig
closed
3 years ago
0
Develop
#86
r78v10a07
closed
3 years ago
0
Adding edn mode as base command as the trimmomatic CWLs are separated…
#85
r78v10a07
closed
4 years ago
0
Develop
#84
r78v10a07
closed
4 years ago
0
Updating ChIPexo pipeline
#83
r78v10a07
closed
4 years ago
0
Generalizing diffbind docker image
#82
r78v10a07
closed
4 years ago
0
Develop
#81
r78v10a07
closed
4 years ago
0
Adding parallel diffbind to the ChIPSeq pipeline
#80
r78v10a07
closed
4 years ago
0
Parallel IDR workflow for ChIPSeq
#79
r78v10a07
closed
4 years ago
0
Parallel peak calling workflow for ChIP-Seq
#78
r78v10a07
closed
4 years ago
0
Fixing bugs
#77
r78v10a07
closed
4 years ago
0
Merging Develop branch
#76
r78v10a07
closed
4 years ago
0
Merging from Develop branch
#75
r78v10a07
closed
4 years ago
0
Consider contributing the CWL tool descriptions to the community repo for shared maintenance
#74
mr-c
closed
3 years ago
1
Updating Python scripts
#73
r78v10a07
closed
4 years ago
0
Fixing SRA-toolkit new config
#72
r78v10a07
closed
4 years ago
0
Updating R CWL scripts with software requirements
#71
r78v10a07
closed
4 years ago
0
Updating python CWL scripts with software requirements
#70
r78v10a07
closed
4 years ago
0
Updating workflows
#69
r78v10a07
closed
4 years ago
0
Adding HiCExplorer CWL definitions
#68
r78v10a07
closed
4 years ago
0
Updating Bioconda software requirement
#67
r78v10a07
closed
4 years ago
0
Updating docker and biocnda packages for tools
#66
r78v10a07
closed
4 years ago
0
Adding schema
#65
r78v10a07
closed
4 years ago
0
Adding CWL to remove vector and duplicates in fasta files
#64
r78v10a07
closed
4 years ago
0
Adding Tax ID and taxa name to the contamination output
#63
r78v10a07
closed
4 years ago
0
Removing RPSBlast and RPSTBlast out of the annotation workflow
#62
r78v10a07
closed
4 years ago
0
Fixing bug on sequences counting
#61
r78v10a07
closed
4 years ago
0
Adding CWL to count sequences in fasta file
#60
r78v10a07
closed
4 years ago
0
Bumping tools to the latest version
#59
r78v10a07
closed
4 years ago
0
Bumping tools to the latest version
#58
r78v10a07
closed
4 years ago
0
Fixing bugs
#57
r78v10a07
closed
4 years ago
0
Adding evalue as parameter
#56
r78v10a07
closed
4 years ago
0
Fixing blast options
#55
r78v10a07
closed
4 years ago
0
Adding BlastN options to detect vectors
#54
r78v10a07
closed
4 years ago
0
Adding min length parameter
#53
r78v10a07
closed
4 years ago
0
Develop
#52
r78v10a07
closed
4 years ago
0
Updating develop branch
#51
r78v10a07
closed
4 years ago
0
switch to https://schema.org/version/latest/schema.rdf
#50
mr-c
closed
4 years ago
0
Removing BlastN from the transcriptome annotation workflow
#49
r78v10a07
closed
4 years ago
0
Fixing bug in workflow for vector removal
#48
r78v10a07
closed
4 years ago
0
Fixing bug vector removal python code
#47
r78v10a07
closed
4 years ago
0
Adding vector removal to the transcriptome workflow
#46
r78v10a07
closed
4 years ago
0
Fixing bug in workflow for reads assigment to transcriptome
#45
r78v10a07
closed
4 years ago
0
Adding workflow for reads assigment to transcriptome
#44
r78v10a07
closed
4 years ago
0
Fixing bugs from issue #32
#43
r78v10a07
closed
4 years ago
0
Removing test workflow in Annotation
#42
r78v10a07
closed
4 years ago
0
Fixing error reported in issue #31
#41
r78v10a07
closed
4 years ago
0
Solving issues reported in issue #30 regarding obsolete options in gz…
#40
r78v10a07
closed
4 years ago
0
Adding annotation workflow without blastp task
#39
r78v10a07
closed
4 years ago
0
Next