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ncbi
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cwl-ngs-workflows-cbb
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
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Testing annotation workflow without task option
#38
r78v10a07
closed
4 years ago
0
Updating jupyter conda env to include parallel
#37
r78v10a07
closed
4 years ago
0
Adding unzip to the jupyter env
#36
r78v10a07
closed
4 years ago
0
Updating Homer for chip-exo workflow
#35
r78v10a07
closed
4 years ago
0
Updating jupyterngsplugin version
#34
r78v10a07
closed
4 years ago
0
Adding transcriptome annotation workflow
#33
r78v10a07
closed
4 years ago
0
`tools/MACS/macs2-callpeak.cwl` has no output `outdir` but several workflows refer to it
#32
ghost
closed
4 years ago
1
Use of `description` instead of `doc`
#31
ghost
closed
4 years ago
1
workflows/RSeQC/rseqc-bam-qc-SE.cwl: reference to non-existent step inputs
#30
ghost
closed
4 years ago
1
Consider using -task blastp-fast
#29
christiam
closed
4 years ago
0
Updating perl versions
#28
r78v10a07
closed
4 years ago
0
Develop
#27
r78v10a07
closed
4 years ago
0
Updating SRA-Tools to version 2.10
#26
r78v10a07
closed
4 years ago
0
Adding normalization method to chipexo pipeline
#25
r78v10a07
closed
4 years ago
0
Develop
#24
r78v10a07
closed
4 years ago
0
Fixing error in the subsample workflow
#23
r78v10a07
closed
5 years ago
0
Develop
#22
r78v10a07
closed
5 years ago
0
Adding tool BlastN
#21
r78v10a07
closed
5 years ago
0
Develop
#20
r78v10a07
closed
5 years ago
0
Develop
#19
r78v10a07
closed
5 years ago
0
Updating ChIP-Seq conda env
#18
r78v10a07
closed
5 years ago
0
Adding UCSD utils to convert from GTF to bed
#17
r78v10a07
closed
5 years ago
0
Goenrichment available on Bioconda. Updating all requirements and docs
#16
r78v10a07
closed
5 years ago
0
Adding jupyterplugin to the conda requirement
#15
r78v10a07
closed
5 years ago
0
Develop
#14
r78v10a07
closed
5 years ago
0
Updating jupyter env
#13
r78v10a07
closed
5 years ago
0
Develop
#12
r78v10a07
closed
5 years ago
0
Updating multiple workflows
#11
r78v10a07
closed
5 years ago
0
Adding Conda environment for the workflows
#10
r78v10a07
closed
5 years ago
0
Adding missing tools for RNASeq workflow
#9
r78v10a07
closed
5 years ago
0
Develop
#8
r78v10a07
closed
5 years ago
0
Adding more packages to the conda requirement file
#7
r78v10a07
closed
5 years ago
0
Adding info to the README
#6
r78v10a07
closed
5 years ago
0
Adding requirements
#5
r78v10a07
closed
5 years ago
0
Adding workflow to align and quantify RNASeq data from an SRA accession
#4
r78v10a07
closed
5 years ago
0
Adding rnaseq quantification without TDF
#3
r78v10a07
closed
5 years ago
0
Bumping tools versions
#2
r78v10a07
closed
5 years ago
0
Updating igvtools docker image
#1
r78v10a07
closed
5 years ago
0
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