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ncbi
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fcs
Foreign Contamination Screening caller scripts and documentation
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Are endogenous elements removed by FCS?
#41
BenjaminGuinet
closed
1 year ago
9
How to create custom DataBase for FCS-GX?
#40
maruiqi0710
closed
1 year ago
1
Is there a way to use FCS-GX before the assembly step, especially if the input data contains a high proportion of contaminant sequences?
#39
ChathumadaviE
closed
1 year ago
10
Docker container (ncbi/fcs-gx) latest does not work
#38
AlohaPropolis
closed
1 year ago
2
clean genome with singularity
#37
scorreard
closed
1 year ago
2
slack test
#36
pstrope
closed
1 year ago
0
[BUG]: run_fcsgx.py IndexError if asserted tax-div != inferred primary
#35
ptrebert
closed
1 year ago
1
[BUG]: Assertion failed: seen_queries.insert(next_seq_id).second
#34
ptrebert
closed
1 year ago
1
[BUG]: run_fcsgx.py fails if out dir is not present
#33
ptrebert
closed
1 year ago
1
[BUG]: using manifest file requires gzipped input
#32
ptrebert
closed
1 year ago
2
[BUG]: v0.3.0 FileNotFoundError: /app/bin/classify_taxonomy
#31
ptrebert
closed
1 year ago
5
[FEATURE REQUEST]: <title>
#30
accopeland
closed
1 year ago
2
Performance differences between 0.2.2 and 0.3.0
#29
olekto
closed
1 year ago
1
Python error running quickstart example -- FIXED
#28
accopeland
closed
1 year ago
0
[FEATURE REQUEST]: Decontaminated contig fasta
#27
andigoni
closed
1 year ago
4
[BUG]: retrieve_db.py: error: unrecognized arguments: --rm
#26
bibionid
closed
1 year ago
8
[FEATURE REQUEST]: Option to disable validate_fasta in FCS-adaptor
#25
brantfaircloth
closed
1 year ago
6
St13runtime_error in 'all' test
#24
bibionid
closed
1 year ago
5
Set GX_NUM_CORES
#23
MicheleSonny
closed
1 year ago
6
run_fcsadaptor.sh is not trimming
#22
gunjanpandey
closed
1 year ago
2
action_report fails with IndexError
#21
reslp
closed
1 year ago
3
Question on how to interpret results of FCS-GX
#20
reslp
closed
1 year ago
6
--split_fasta
#19
tillenglert
closed
1 year ago
4
Pre download for the FCS-GX database
#18
tillenglert
closed
1 year ago
3
Sequence identifiers
#17
tk2
closed
1 year ago
15
The result file is missing an important column
#16
abcyulongwang
closed
1 year ago
2
Avoid using /tmp
#15
tk2
closed
1 year ago
2
fcs-gx: contamination in overview and taxonomy, but 0bp suggestions
#14
JudithR
closed
1 year ago
3
Extract fasta sequences
#13
gunjanpandey
closed
1 year ago
9
Citeable DOI?
#12
sheinasim
closed
1 year ago
1
fcs-adapter: failure at blast stage
#11
cahende
closed
1 year ago
4
FCS adaptor not working with docker
#10
d4straub
closed
1 year ago
2
testing integration
#9
pstrope
closed
1 year ago
1
Change default container path
#8
weilu1998
closed
1 year ago
3
test
#7
pstrope
closed
1 year ago
4
Resource control/speed
#6
olekto
closed
1 year ago
12
non-containerized version?
#5
nextgenusfs
closed
1 year ago
5
Container does not contain bash
#4
d4straub
closed
1 year ago
7
Running FCS-GX without internet access
#3
olekto
closed
1 year ago
7
Rename run_fcsgenome.py to run_fcsgx.py
#2
pstrope
closed
1 year ago
0
Test
#1
pstrope
closed
2 years ago
0
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