Magic-BLAST documentation:

https://ncbi.github.io/magicblast

Publication:

Boratyn GM, Thierry-Mieg J, Thierry-Mieg D, Busby B, Madden TL. (2019) Magic-BLAST, an accurate RNA-seq aligner for long and short reads. BMC Bioinformatics 20: 405. [article]

Scripts to recreate published experimental results:

https://github.com/ncbi/magicblast/tree/master/article