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ncborcherding
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scRepertoire
A toolkit for single-cell immune profiling
https://www.borch.dev/uploads/screpertoire/
MIT License
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Minor combineTCR fix
#450
Qile0317
opened
16 hours ago
0
Questions pertaining to issue #235 in clonalDiversity()
#449
zoqaiyum
closed
2 days ago
1
Parse BCR data load
#448
ajsapre
closed
3 days ago
5
Is it possible to graph only the top 10 clonotypes using alluvialClones()?
#447
zoqaiyum
closed
5 days ago
1
Follow-up question for issue #443
#446
zoqaiyum
closed
4 days ago
4
trust4 issue with combineTCR
#445
caro471
closed
1 week ago
3
How CompareClonotypes() function and HighlightClonotypes() differ ?
#444
GauravJethva0
closed
1 week ago
1
clonalOverlap() understanding which clonotypes are shared
#443
zoqaiyum
closed
1 week ago
2
drop all NA rows from loadContigs output & clean up imports
#442
Qile0317
closed
1 week ago
1
re-export expression2List() with deprecation message
#441
Qile0317
closed
1 week ago
0
Using expression2List()
#440
zoqaiyum
closed
2 weeks ago
3
Clonaldiversity plot with seurat object not same as combineTCR
#439
bapoorva
closed
2 weeks ago
1
v2.2.1
#438
ncborcherding
closed
2 weeks ago
0
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘scRepertoire’ 1.10.1 is being loaded, but >= 2.0.8 is required
#437
GaF123
closed
3 weeks ago
5
The 2.0.5 clonalCluster example code on the vignette doesn't work on dev branch
#436
Qile0317
closed
3 weeks ago
4
Update Ibex.Rmd for Seurat v5 compatibility
#435
timothyjtan
closed
3 weeks ago
2
quietBCRgenes not compatible with Seurat v5
#434
timothyjtan
closed
3 weeks ago
2
The clonalCluster() function cannot generate clusters.
#433
HaiqiaoSun
closed
3 weeks ago
6
add count comparison functionality to `clonalCompare()`
#432
Qile0317
closed
3 weeks ago
3
Cell number imbalance across patients
#431
WuRAFY
closed
3 weeks ago
1
Fix TRUST4 loadContigs issue in #429
#430
Qile0317
closed
3 weeks ago
1
loadContigs error when read TRUST4 output containing only 1 row
#429
WuRAFY
closed
3 weeks ago
2
Following clonotypes between samples
#428
ASNbioinf
closed
3 weeks ago
6
Codes to generate tables that summarise clonal expansion and sharing for a metadata column in Seurat object
#427
denvercal1234GitHub
closed
1 month ago
3
Problems in analyzing the VDJ of the antibody of a quasi-monoclonal B cell mouse
#426
JavierMolinaV
closed
1 month ago
1
Improve performance of `.lvCompare()`
#425
Qile0317
closed
2 weeks ago
4
[Feature request] Add options for BCR clonotype inference
#424
Qile0317
opened
1 month ago
0
export table eagerly
#423
pwwang
closed
1 month ago
0
potentially broken visualization of percentVJ on docsite
#422
Qile0317
closed
1 month ago
2
v2.0.8
#421
ncborcherding
closed
1 month ago
0
[Bug] Error when exportTable = TRUE for positionalProperty
#420
pwwang
closed
1 month ago
7
Update loadContigs.R
#419
Liripo
closed
1 month ago
0
getCirclize - custom variable Bug
#418
jakob-arnold
closed
1 month ago
1
Add simple T/BCR doublet detector, use markdown for roxygen, and slight refactoring of combineExpression
#417
Qile0317
closed
3 weeks ago
5
clonotypeBias sensible approach to calculating baseline frequency
#416
jhjlee
closed
1 month ago
1
percentVJ all 0
#415
jiw181
closed
1 month ago
4
update clonalLength()
#414
ncborcherding
closed
1 month ago
0
fix ncborcherding/scRepertoire#412
#413
pwwang
closed
1 month ago
0
[BUG] `clonalLength()` exports NULL when `group.by` and a single chain are provided
#412
pwwang
closed
1 month ago
2
Get p-value in clonal overlap
#411
synatkeamsk
closed
1 month ago
1
v2.0.7
#410
ncborcherding
closed
1 month ago
0
Issue with "group.by" for clonalOverlap and clonalCompare
#409
tonypanx
closed
1 month ago
7
error on subClones function
#408
YuliangWang316
closed
2 months ago
1
v2.0.6
#407
ncborcherding
closed
2 months ago
0
Error in CoNGA.dist(sc, features, assay[x]) : no slot of name "data" for this object of class "Assay5"
#406
tumorscholar
closed
1 month ago
2
Can't capitalize custom variables in cloneCall
#405
chloetu-dfci
closed
2 months ago
2
how to check whether there is TCR alpha alpha in the scTCRseq.
#404
synatkeamsk
closed
2 months ago
3
interpretation of BCR clones with BCRstrict
#403
jjs847
closed
2 months ago
3
merge into devel
#402
ncborcherding
closed
2 months ago
0
clonalCluster error
#401
Liripo
closed
3 months ago
1
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