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ncsa
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MayomicsVC
Variant Calling Pipeline in Cromwell/WDL
MIT License
21
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5
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Increasing number of cores for running GATK4 tools.
#107
ambarishK
opened
5 years ago
3
proofreading shell readme
#106
katk303
closed
5 years ago
0
proofreading
#105
katk303
closed
5 years ago
0
Dev
#104
joshfactorial
closed
5 years ago
0
Dev
#103
joshfactorial
closed
5 years ago
0
Somatic
#102
joshfactorial
closed
5 years ago
0
Bash script testing
#101
joshfactorial
closed
5 years ago
0
Patch 1
#100
Steven-N-Hart
closed
5 years ago
1
Pipeline Standards
#99
Steven-N-Hart
closed
5 years ago
0
PipelineStandard Harmonization
#98
Steven-N-Hart
closed
5 years ago
1
Added memory string validation
#97
jacobrh91
closed
5 years ago
0
Somatic cleaning
#96
lsmainzer
closed
5 years ago
0
Somatic
#95
mrweber2
closed
5 years ago
0
Feature/vcf source tag
#94
caross73
closed
5 years ago
0
Somatic cleaning
#93
raobrik
closed
5 years ago
0
Removed type annotations from Python code
#92
jacobrh91
closed
5 years ago
0
all the changes
#91
lsmainzer
closed
5 years ago
0
Renamed source folders and move template.config and key_types.json
#90
jacobrh91
closed
5 years ago
0
Merge runtime_memory into dev
#89
jjackzhn
closed
5 years ago
0
Parser error if json not full
#88
jacobrh91
closed
5 years ago
0
Multiple error statements at once
#87
jacobrh91
closed
5 years ago
0
Added variables to KeyTypes.json and template.config file
#86
jacobrh91
closed
5 years ago
0
added block to haplotyper to allow for no recal table to be passed in…
#85
mken418
closed
5 years ago
0
Removed duplicate warning messages
#84
jacobrh91
closed
5 years ago
0
Send warning if a JSON key had no matching key in the config files
#83
jacobrh91
closed
5 years ago
0
Input reads to normal and tumor
#82
jacobrh91
closed
5 years ago
0
Workflow generator
#81
jacobrh91
closed
5 years ago
0
Merge new changes from Dev
#80
jjackzhn
closed
5 years ago
0
Workflow generator
#79
jacobrh91
closed
5 years ago
0
Split the PlatformUnit variable into an array
#78
jacobrh91
closed
5 years ago
0
Read group assignment msd 175
#77
mrweber2
closed
5 years ago
0
Separate functions msd 196
#76
mken418
closed
5 years ago
0
Preamble script containing USR signal traps
#75
caross73
closed
5 years ago
0
Added traps to every wdl command block for killed cluster jobs
#74
caross73
closed
5 years ago
1
Update README.md
#73
priyab2
closed
5 years ago
0
Call graph generator
#72
jacobrh91
closed
5 years ago
0
Clean up validator
#71
jacobrh91
closed
5 years ago
0
Clean up parser
#70
jacobrh91
closed
5 years ago
0
Rename outputs msd 198
#69
lsmainzer
closed
5 years ago
0
Array input
#68
lsmainzer
closed
5 years ago
1
Bwa mem opts msd 164
#67
mrweber2
closed
5 years ago
0
Added InputRead2 to the list of optional keys (which can be blank; "")
#66
jacobrh91
closed
5 years ago
0
Rename haplotyper extra options string
#65
mken418
closed
5 years ago
0
Rename haplotyper extra options string
#64
mken418
closed
5 years ago
0
Merge parser updates from Dev to Array_input
#63
jjackzhn
closed
5 years ago
0
Input reads as nested arrays
#62
jacobrh91
closed
5 years ago
0
Merge renamed design blocks to array_input
#61
jjackzhn
closed
5 years ago
0
Rename design blocks
#60
lsmainzer
closed
5 years ago
1
Add json to db1 delivery
#59
lsmainzer
closed
5 years ago
2
removing .merged from output of dedup
#58
mrweber2
closed
5 years ago
0
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