============================ ndex-webapp-python-exporters

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Command line exporters written in Python used by the NDEx REST service.

Supported Exporters

• Graphml_

Tools

• ndex_exporters.py Takes file in NDEx CX_ format and converts to format specified as a command line argument

Dependencies

• argparse <https://pypi.python.org/pypi/argparse>_
• ndex2 <https://pypi.org/project/ndex2/>_

Compatibility

• Python 3.5+

Installation

::

pip install ndex_webapp_python_exporters

Or directly from repo (requires git)

::

git clone https://github.com/ndexbio/ndex_webapp_python_exporters.git cd ndex_webapp_python_exporters python setup.py install

Example usage

The example below assumes foo.cx is a file in NDEx CX_ format

::

cat foo.cx | ndex_exporters.py graphml > foo.graphml

NOTE: For the above example, the network Thyroid Cancer <http://www.ndexbio.org/#/network/54a9a35b-1e5f-11e8-b939-0ac135e8bacf> can be downloaded as a file named foo.cx in NDEx CX format.

Credits

• Graphml_ exporter derived from code developed by Cecilia Zhang

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

.. Cookiecutter: https://github.com/audreyr/cookiecutter .. audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage .. NDEx CX: http://www.home.ndexbio.org/data-model/ .. Graphml: http://graphml.graphdrawing.org/