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neerajkumarvaid / Nuclei_Segmentation

This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using Torch.
http://nucleisegmentationbenchmark.weebly.com/
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dataset information #2

Closed emergencyd closed 6 years ago

emergencyd commented 6 years ago

hi~~I've downloaded images from https://nucleisegmentationbenchmark.weebly.com/ according to https://portal.gdc.cancer.gov/, I categorized the images as below: ├── bladder │   ├── TCGA-DK-A2I6-01A-01-TS1.tif │   └── TCGA-G2-A2EK-01A-02-TSB.tif ├── breast │   ├── TCGA-A7-A13E-01Z-00-DX1.tif │   ├── TCGA-A7-A13F-01Z-00-DX1.tif │   ├── TCGA-AR-A1AK-01Z-00-DX1.tif │   ├── TCGA-AR-A1AS-01Z-00-DX1.tif │   ├── TCGA-E2-A14V-01Z-00-DX1.tif │   └── TCGA-E2-A1B5-01Z-00-DX1.tif ├── bronchus_lung │   ├── TCGA-18-5592-01Z-00-DX1.tif │   ├── TCGA-21-5784-01Z-00-DX1.tif │   ├── TCGA-21-5786-01Z-00-DX1.tif │   ├── TCGA-38-6178-01Z-00-DX1.tif │   ├── TCGA-49-4488-01Z-00-DX1.tif │   └── TCGA-50-5931-01Z-00-DX1.tif ├── colon │   ├── TCGA-AY-A8YK-01A-01-TS1.tiff │   └── TCGA-NH-A8F7-01A-01-TS1.tiff ├── kidney │   ├── TCGA-B0-5698-01Z-00-DX1.tif │   ├── TCGA-B0-5710-01Z-00-DX1.tif │   ├── TCGA-B0-5711-01Z-00-DX1.tif │   ├── TCGA-HE-7128-01Z-00-DX1.tif │   ├── TCGA-HE-7129-01Z-00-DX1.tif │   └── TCGA-HE-7130-01Z-00-DX1.tif ├── prostate │   ├── TCGA-CH-5767-01Z-00-DX1.tif │   ├── TCGA-G9-6336-01Z-00-DX1.tif │   ├── TCGA-G9-6348-01Z-00-DX1.tif │   ├── TCGA-G9-6356-01Z-00-DX1.tif │   ├── TCGA-G9-6362-01Z-00-DX1.tif │   └── TCGA-G9-6363-01Z-00-DX1.tif ├── stomach │   ├── TCGA-KB-A93J-01A-01-TS1.tiff │   └── TCGA-RD-A8N9-01A-01-TS1.tiff I'm not sure if this is right. And I can't find "liver" dataset, but see "bronchus and lung" instead