Following are the instructions to test our state-of-the art deep learning based nuclei segmentation software using an AWS EC2 instance-
Create an instance and configure it for using CUDA enabled Torch (refer to https://drive.google.com/file/d/0ByERBiBsEbuTUS0wdWQ2NUZGTm8/view)
Get the software from Github
Test our state-of-the art nuclei segmentation model
Results will be saved in the /data/testing-data/40x/results folder
Zip the results folder and download in your laptop's "Downloads" folder
This will give you three images from CNN output 1.png, 2.png and 3.png. Please refer to nucleisegmentationbenchmark.weebly.com for post-processing and model details.
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