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neherlab
/
nextalign
🧬 Viral genome reference alignment
MIT License
12
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Seed number
#28
rneher
closed
3 years ago
0
fix: iterate by reference
#27
ivan-aksamentov
closed
3 years ago
0
refactor: remove redundant uninitialized field
#26
ivan-aksamentov
closed
3 years ago
0
fix: resolve Clang error about template template type deduction
#25
ivan-aksamentov
closed
3 years ago
0
troubleshooting install on MacOS
#24
jameshadfield
closed
3 years ago
18
chore: trigger ci
#23
ivan-aksamentov
closed
3 years ago
0
Strip insertions from peptides
#22
ivan-aksamentov
closed
3 years ago
0
chore: add dev dockerfile, add missing dependencies
#21
ivan-aksamentov
closed
3 years ago
0
Make error and warning handling in gene translation and extraction more fine-grained
#20
ivan-aksamentov
closed
3 years ago
0
Avoid nucleotide N and aminoacid X when choosing alignment seed positions
#19
ivan-aksamentov
closed
3 years ago
0
Frame-dependent gap penalties
#18
ivan-aksamentov
closed
3 years ago
0
Trim Ns at the edges of of sequences
#17
ivan-aksamentov
closed
3 years ago
1
Translate genes
#16
ivan-aksamentov
closed
3 years ago
0
Cleanup
#15
ivan-aksamentov
closed
3 years ago
0
Fix/left mismatch gaps
#14
rneher
closed
3 years ago
0
perf: move ref sequence transform out of the loop
#13
ivan-aksamentov
closed
3 years ago
0
chore: improve directory structure
#12
ivan-aksamentov
closed
3 years ago
0
feat: add `output-dir` and `output-basename` parameters
#11
ivan-aksamentov
closed
3 years ago
0
perf: remove ref sequence from algorithm output, don't convert it
#10
ivan-aksamentov
closed
3 years ago
0
Use integer-based strings for sequences
#9
ivan-aksamentov
closed
3 years ago
0
Setup build inside docker
#8
ivan-aksamentov
closed
3 years ago
0
chore: build CLI as a standalone static executable
#7
ivan-aksamentov
closed
3 years ago
0
chore: pass `--std=c++17` to `cppcheck` as we target this standard
#6
ivan-aksamentov
closed
3 years ago
0
docs: expand developers guide in readme
#5
ivan-aksamentov
closed
3 years ago
0
perf: add benchmarks for stripInsertions()
#4
ivan-aksamentov
closed
3 years ago
0
feat: port alignment from nextclade
#3
ivan-aksamentov
closed
3 years ago
0
feat: add algorithm function stubs and link them to cli
#2
ivan-aksamentov
closed
4 years ago
0
feat: add seqan2-based alignment
#1
ivan-aksamentov
closed
4 years ago
0