Archival notice
:warning: This repository is no longer maintained. The code has been integrated and it is further developed at: https://github.com/neicnordic/sensitive-data-archive
SDA Download
sda-download is a go implementation of the Data Out API. The API Reference has example requests and responses.
Deployment
Recommended provisioning method for production is:
- on a
kubernetes clusterusing the helm chart;
For local development/testing see instructions in dev_utils folder. There is an README file in the dev_utils folder with sections for running the pipeline locally using Docker Compose.
API Components
| Component | Role |
|---|---|
| middleware | Performs access token verification and validation |
| sda | Constructs the main API endpoints for the NeIC SDA Data Out API. |
Internal Components
| Component | Role |
|---|---|
| config | Package for managing configuration. |
| database | Provides functionalities for using the database, as well as high level functions for working with the SDA-DB. |
| storage | Provides interface for storage areas such as a regular file system (POSIX) or as a S3 object store. |
| session | DatasetCache stores the dataset permissions and information whether this information has already been checked or not. This information can then be used to skip the time-costly authentication middleware |
Package Components
| Component | Role |
|---|---|
| auth | Auth pkg is used by the middleware to parse OIDC Details and extract GA4GH Visas from a GA4GH Passport |
| request | This pkg Stores a HTTP client, so that it doesn't need to be initialised on every request. |