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netZoo
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netZooPy
netZooPy is a network biology package implemented in Python.
https://netzoo.github.io/
GNU General Public License v3.0
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adding long description to setup
#357
violafanfani
closed
1 month ago
0
fixing pypi
#356
violafanfani
closed
1 month ago
1
Load netzoopy to pypi
#355
violafanfani
closed
1 month ago
0
netZooPy on pypi
#354
violafanfani
closed
3 weeks ago
1
adding to @newmanno PR for tmp folder
#353
violafanfani
closed
1 month ago
1
changed tmp file write location
#352
newmanno
closed
1 month ago
5
PANDA does not take both Paths and Dataframes
#351
RxDocTomisin22
opened
4 months ago
0
Move IO functions outside of PANDA
#350
violafanfani
opened
5 months ago
0
Fix variance computation in bonobo
#349
Enakshi-Saha
closed
5 months ago
2
Fix bonobo naming
#348
violafanfani
closed
6 months ago
0
PUMA
#347
marouenbg
closed
6 months ago
1
Rename Ligress to Bonobo
#346
marouenbg
closed
6 months ago
1
Bump version: 0.10.1 → 0.10.2
#345
violafanfani
closed
8 months ago
1
fixed lioness command line after having removed the save memory flag
#344
violafanfani
closed
8 months ago
1
PANDA- adding guard against invalid gene IDs and test case.
#343
blawney
closed
8 months ago
1
Add otter-lioness and cli
#342
violafanfani
closed
5 months ago
2
Catch gene mismatches in PANDA
#341
blawney
closed
8 months ago
2
added bobono command line and docs for it
#340
violafanfani
closed
8 months ago
1
fixed readthedocs requirements
#339
violafanfani
closed
8 months ago
1
Add sphinx_rtd_theme to yaml file
#338
violafanfani
closed
8 months ago
1
added bonobo to docs and small readme fix. Added LIONESS examples
#337
violafanfani
closed
9 months ago
1
netZooPy is an R package to reconstruct, analyse, and plot biological networks.
#336
violafanfani
closed
9 months ago
1
LIONESS Py error
#335
wilsonavac
closed
8 months ago
3
DRAGON- Ambiguous exception thrown during calculation of p-values
#334
blawney
opened
11 months ago
4
Initialization of protein-protein interaction in Panda
#333
janursa
closed
5 months ago
2
updated conda test to make it faster
#331
violafanfani
closed
1 year ago
1
Add cobra blurb
#330
violafanfani
closed
1 year ago
1
adding BONOBO and COBRA to README
#329
violafanfani
closed
1 year ago
1
Ligress bayesian
#328
Enakshi-Saha
closed
1 year ago
1
Integration of cobra in panda
#327
soelmicheletti
closed
1 year ago
3
Update cobra.py
#326
marouenbg
closed
1 year ago
1
Added exceptions and unit tests for cases where the shrunken covariance matrix is singular
#325
katehoffshutta
closed
1 year ago
2
Bump version: 0.9.16 → 0.9.17
#324
violafanfani
closed
1 year ago
0
lioness dragon now accepts either two filenames and preprocesses the …
#323
violafanfani
closed
1 year ago
3
Lioness for dragon merge_col
#322
violafanfani
closed
1 year ago
2
Add cobra with scipy
#321
Annixious
closed
1 year ago
2
Update CONDOR unit testing to account for stochasticity
#320
violafanfani
opened
1 year ago
0
Fix conda
#319
violafanfani
closed
1 year ago
1
adding manual conda testing
#318
violafanfani
closed
1 year ago
0
Fix conda
#317
violafanfani
closed
1 year ago
0
Fix dep
#316
violafanfani
closed
1 year ago
1
Devel
#315
violafanfani
closed
1 year ago
1
Update README.md
#314
marouenbg
closed
1 year ago
1
Changed visibility of compute_panda to public
#313
soelmicheletti
closed
1 year ago
3
Please refer to igraph instead of python-igraph
#312
szhorvat
closed
1 year ago
2
Update description; fix merge index suffixes
#309
katehoffshutta
closed
1 year ago
2
Unable to find hdf5 when building locally (Mac M1)
#308
katehoffshutta
closed
1 year ago
3
trying to fix conda test
#307
violafanfani
closed
1 year ago
1
fixing pandas for v2.0.0, removing append
#306
violafanfani
closed
1 year ago
2
Legacy mode without remove_missing=True causes shape mismatch
#303
blawney
closed
1 year ago
1
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