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netZoo
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netbooks
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
https://netbooks.networkmedicine.org
GNU General Public License v3.0
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add section with toy example on domonster function for use with existing panda/other GRN
#37
laurenhsu1
closed
2 months ago
6
Different results in GSEA for LUAD sex difference
#36
marouenbg
closed
3 months ago
1
error message received for chunks 28-30 in panda_gtex_tutorial_server.ipynb
#33
wilsonavac
closed
5 months ago
1
package gprofiler2 missing from condor-netbook.ipynb RP2
#32
wilsonavac
closed
5 months ago
2
Error received for chunk 28 code in panda_gtex_tutorial_server.ipynb
#31
wilsonavac
closed
5 months ago
2
unable to install/load visNetwork dependency for panda_gtex_tutorial_server.ipynb netbook
#30
wilsonavac
closed
5 months ago
1
error loading fgsea package for "panda_gtex_tutorial_server.ipynb" netbook
#29
wilsonavac
closed
5 months ago
3
SEAHORSE Netbooks: Syntax error
#28
Enakshi-Saha
closed
5 months ago
1
node2vec2rank analysis
#27
pmandros
closed
6 months ago
1
403 : Forbidden
#26
Tanmayboy
closed
5 months ago
0
Netbooks down?
#25
ghost
closed
8 months ago
2
1
#24
ganastrx3
closed
9 months ago
0
Corrected file path in cobra
#23
soelmicheletti
closed
1 year ago
0
Added COBRA tutorial in Python
#22
soelmicheletti
closed
1 year ago
1
Running COBRA tutorial in R
#21
soelmicheletti
closed
1 year ago
1
Changed margins in cobra figure
#20
soelmicheletti
closed
1 year ago
0
error messages from ApplicationwithTBdataset tutorial
#19
wilsonavac
closed
1 year ago
3
Added tutorial for COBRA
#18
soelmicheletti
closed
1 year ago
0
can't get root on netbooks terminals
#17
arianabbasi1389
closed
1 year ago
2
Add text describing differences when using recount3 in "Processing GTEx and TCGA gene expression data for network analysis" notebook
#16
chit-sudeep
closed
1 year ago
1
update seahorse
#15
marouenbg
closed
1 year ago
0
Added seahorse notebook
#14
Enakshi-Saha
closed
1 year ago
0
update TIGER notebook
#13
cchen22
closed
1 year ago
0
Updated dragon tutorial
#12
katehoffshutta
closed
1 year ago
0
Create TIGER.ipynb
#11
cchen22
closed
1 year ago
2
data for "Exploring eQTL tissue regulation with CONDOR"
#10
violafanfani
opened
1 year ago
0
Netbooks server link broken and Colon Cancer paths for files in tutorials not available
#9
Surya-Upadhyayula
closed
1 year ago
2
Not able to find file paths in some notebooks
#8
alejokeuro
closed
1 year ago
2
Error in h(simpleError(msg, call))
#7
lemonsky123
closed
1 year ago
7
building a regulation prior network failing in Python
#6
marouenbg
closed
2 years ago
1
lioness python tutorial failing
#5
marouenbg
closed
2 years ago
1
CONDOR tutorial with netZooPy 0.9.6
#4
marouenbg
closed
2 years ago
3
added jupyter nb for the maize study
#3
rtpop
closed
2 years ago
1
updated directory non-precomputed alpaca scores
#2
mararie
closed
3 years ago
1
updated gbm code to plot alpaca scores
#1
mararie
closed
3 years ago
1