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neurobagel
/
bagel-cli
Command line tool for Neurobagel data parsing and annotation
https://neurobagel.org/cli/
MIT License
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5
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Bump tests/neurobagel_examples from `0a86d83` to `8811bc0`
#400
dependabot[bot]
opened
1 day ago
0
Bump bagel/pipeline-catalog from `841396c` to `6a1a4d0`
#399
dependabot[bot]
closed
1 day ago
1
Bump tests/neurobagel_examples from `0a86d83` to `66bbba1`
#398
dependabot[bot]
closed
1 day ago
3
Add reminder about missing values to error message for age column parsing
#397
alyssadai
opened
1 week ago
0
[FIX] Update docs link in README.md
#396
alyssadai
closed
1 week ago
3
[CI] Remove coveralls
#395
surchs
closed
1 week ago
2
Bump codecov/codecov-action from 4 to 5
#394
dependabot[bot]
closed
1 week ago
1
Bump tests/bids-examples from `2f634a1` to `507df66`
#393
dependabot[bot]
closed
1 week ago
1
Bump tests/neurobagel_examples from `66c32ef` to `0a86d83`
#392
dependabot[bot]
closed
1 week ago
1
[ENH] Load pipeline catalog dynamically and error out when it is empty/not found
#391
surchs
closed
1 week ago
6
Add arg to `bids` command for absolute path to BIDS root
#390
alyssadai
opened
1 week ago
0
[REF] Upgrade codebase to Pydantic>2
#389
alyssadai
closed
1 week ago
3
Bump tests/neurobagel_examples from `f378f48` to `66c32ef`
#388
dependabot[bot]
closed
2 weeks ago
1
Bump tests/bids-examples from `38e3467` to `2f634a1`
#387
dependabot[bot]
closed
2 weeks ago
1
Bump bagel/pipeline-catalog from `50ffffc` to `841396c`
#386
dependabot[bot]
closed
1 week ago
2
[REF] Refactor utilities
#385
alyssadai
closed
2 weeks ago
4
🔄 synced file(s) with neurobagel/workflows
#384
neurobagel-bot[bot]
closed
2 weeks ago
2
`pipeline-catalog` should be fetched dynamically
#383
alyssadai
closed
1 week ago
1
Emit warning instead of erroring out when pipeline/version not recognized
#382
alyssadai
opened
3 weeks ago
0
Bump bagel/pipeline-catalog from `65167b3` to `50ffffc`
#381
dependabot[bot]
closed
3 weeks ago
0
Investigate running tests on installed `bagel` package
#380
alyssadai
opened
3 weeks ago
0
[FIX] Package `pipeline-catalog` as data files in CLI installation
#379
alyssadai
closed
3 weeks ago
3
Bump bids-examples from `7de1e8c` to `38e3467`
#378
dependabot[bot]
closed
3 weeks ago
0
Bump neurobagel_examples from `cf2734e` to `f378f48`
#377
dependabot[bot]
closed
3 weeks ago
0
CI should not install in dev mode
#376
surchs
closed
3 weeks ago
2
[BUG] Pipeline catalog is now inside the container but still not found by the CLI
#375
michellewang
closed
3 weeks ago
1
Error out when `pipeline-catalog` not found or returns empty index of pipelines
#374
alyssadai
closed
1 week ago
1
[FIX] Make `pipeline-catalog` submodule available to built Docker image
#373
alyssadai
closed
3 weeks ago
4
[BUG] Unrecognized pipelines when adding imaging derivatives
#372
michellewang
closed
3 weeks ago
5
Bump neurobagel_examples from `d44875e` to `cf2734e`
#371
dependabot[bot]
closed
3 weeks ago
1
[FIX] Add missing `_id` suffix to processing status file column mappings
#370
alyssadai
closed
3 weeks ago
3
CLI expects outdated processing status file column names
#369
alyssadai
closed
3 weeks ago
1
[DOC] Move pre-commit setup to README.md
#368
alyssadai
closed
4 weeks ago
3
Bump bids-examples from `1d7cf31` to `7de1e8c`
#367
dependabot[bot]
closed
1 month ago
0
Bump coverallsapp/github-action from 2.3.3 to 2.3.4
#366
dependabot[bot]
closed
1 month ago
0
[DOC] Remove usage instructions & update development environment section in README
#365
alyssadai
closed
1 month ago
3
Bump bids-examples from `bcd3cb9` to `1d7cf31`
#364
dependabot[bot]
closed
1 month ago
2
Bump coverallsapp/github-action from 2.3.1 to 2.3.3
#363
dependabot[bot]
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#362
pre-commit-ci[bot]
closed
1 month ago
2
Bump coverallsapp/github-action from 2.3.0 to 2.3.1
#361
dependabot[bot]
closed
1 month ago
2
[INF] Add script to generate `nb_vocab.ttl`
#360
alyssadai
closed
1 month ago
3
Create script to automatically generate `nb_vocab.ttl` based on `models.py`
#359
alyssadai
closed
1 month ago
1
[REF] Rename Neurobagel-created session to `ses-unnamed`
#358
alyssadai
closed
1 month ago
3
[pre-commit.ci] pre-commit autoupdate
#357
pre-commit-ci[bot]
closed
1 month ago
2
[ENH] Update `bagel bids` to handle JSONLD inputs incl. derivative metadata
#356
alyssadai
closed
1 month ago
2
Bump bids-examples from `7c18d68` to `bcd3cb9`
#355
dependabot[bot]
closed
1 month ago
1
Bump neurobagel_examples from `8e13bf2` to `d44875e`
#354
dependabot[bot]
closed
1 month ago
1
Bump neurobagel_examples from `d37c4d7` to `8e13bf2`
#353
dependabot[bot]
closed
1 month ago
1
Use Nipoppy schema to validate proc status TSV for bagel derivatives command
#352
alyssadai
opened
1 month ago
2
🔄 synced file(s) with neurobagel/workflows
#351
surchs
closed
1 month ago
2
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