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neurobagel
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bulk_annotations
Retroactively annotate a large number of BIDS datasets at once
MIT License
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🔄 synced file(s) with neurobagel/workflows
#41
surchs
closed
3 months ago
0
🔄 synced file(s) with neurobagel/workflows
#40
surchs
closed
5 months ago
0
Bump actions/setup-python from 4 to 5
#39
dependabot[bot]
opened
9 months ago
0
Bump actions/stale from 8 to 9
#38
dependabot[bot]
opened
9 months ago
0
Taking stock of the repo after our open neuro frenzy
#37
surchs
closed
7 months ago
1
[ENH] Update CLI calls and README
#36
alyssadai
closed
10 months ago
0
[ENH] Merge the add-description changes
#35
surchs
closed
10 months ago
0
🔄 synced file(s) with neurobagel/workflows
#34
surchs
closed
10 months ago
0
Bump actions/checkout from 3 to 4
#32
dependabot[bot]
closed
10 months ago
0
🔄 synced file(s) with neurobagel/workflows
#31
surchs
closed
10 months ago
0
Add script to fetch data and run CLI for a given OpenNeuro dataset ID
#30
alyssadai
closed
12 months ago
0
Using datalad to automate OpenNeuro CLI running
#29
maelleF
closed
12 months ago
1
Do explicit check for missing values for tool / continuous column types
#28
surchs
opened
1 year ago
1
Surchs workflow 3
#27
surchs
closed
1 year ago
0
Update community_pr.yml
#26
surchs
closed
1 year ago
0
Create community_pr.yml
#25
surchs
closed
1 year ago
0
[FIX] Process missing values separately
#24
surchs
closed
1 year ago
1
OpenNeuro bulk processing script ignores missing values
#23
alyssadai
closed
1 year ago
0
[ENH] Provide dataset portal URI + human-readable name when bulk-running CLI
#22
alyssadai
closed
1 year ago
0
Add helper Python script to parse dataset name using pybids if exists
#21
alyssadai
closed
1 year ago
0
Dataset .jsonld files missing portalURI for datasets
#20
alyssadai
closed
1 year ago
3
Code to process OpenNeuro jsonld files
#19
surchs
closed
1 year ago
1
[FIX] Give age columns a Transformation key
#18
surchs
closed
1 year ago
2
Bulk data dictionaries currently missing type annotations (`Transformation`) for age
#17
alyssadai
closed
1 year ago
1
Annotate the non-MRI datasets
#16
surchs
closed
1 month ago
1
Update annotations
#15
surchs
closed
10 months ago
2
Process annotated .tsv into Neurobagel data dictionaries
#14
surchs
closed
1 year ago
0
[FIX] keep annotation from data dict even for column of numeric values
#13
Remi-Gau
closed
1 year ago
3
Known issue with OpenNeuro annotation: assessment tool availability is overestimated
#12
surchs
closed
7 months ago
1
[BUG] Numeric levels are not expanded
#11
surchs
closed
1 year ago
2
Annotate four representative OpenNeuro datasets
#10
surchs
closed
1 year ago
8
[ENH] generate summary file for OpenNeuro pheno with label levels
#9
Remi-Gau
closed
1 year ago
1
Create a summary file to bulk annotate OpenNeuro pheno data: part 2 include levels
#8
Remi-Gau
closed
1 year ago
4
Bump actions/setup-python from 3 to 4
#7
dependabot[bot]
closed
1 year ago
0
[ENH] add script to list all columns of all participants.tsv from openneuro
#6
Remi-Gau
closed
1 year ago
2
Create automatic process to upload .jsonld files to a graph instance
#5
surchs
closed
1 year ago
5
Create process to automatically process annotated BIDS datalad dataset into graph ready file
#4
surchs
closed
1 year ago
8
Create and then store Neurobagel data dictionaries from bulk annotation
#3
surchs
closed
1 year ago
6
Annotate the OpenNeuro datasets
#2
surchs
closed
1 year ago
9
Create a summary file to bulk annotate OpenNeuro pheno data
#1
surchs
closed
1 year ago
13