Please refer to our official documentation for more information on Neurobagel federation and how to deploy your own federation API.

Launching the API

1. Set the local Neurobagel nodes to federate over

Create a configuration JSON file called local_nb_nodes.json containing the URLs and (arbitrary) names of the local nodes you wish to federate over. Each node must be denoted by a dictionary {} with two key-value pairs: "NodeName" for the name of the node, and "ApiURL" for the url of the API exposed for that node. Multiple nodes must be wrapped in a list [].

For a template local_nb_nodes.json file that you can clone and edit, see the neurobagel/recipes repo.

Examples:

local_nb_nodes.json with one local node API running on http://localhost:8000

{
    "NodeName": "Local graph",
    "ApiURL": "http://host.docker.internal:8000"
}

_NOTE: If the local node API(s) you are federating over is running on the same host machine as the federation API (e.g., the URL to access the node API is http://localhost:XXXX), in local_nb_nodes.json you must replace localhost with host.docker.internal in the corresponding "ApiURL", as shown above (for more information, see the Docker documentation)._

local_nb_nodes.json with two local nodes

[
    {
        "NodeName": "Local graph 1",
        "ApiURL": "http://host.docker.internal:8000"
    },
    {
        "NodeName": "Local graph 2",
        "ApiURL": "http://192.168.0.1"
    }
]

2. Run the Docker container

docker pull neurobagel/federation_api

# Run this next command in the same directory where your `local_nb_nodes.json` file is located
docker run -d -v ${PWD}/local_nb_nodes.json:/usr/src/local_nb_nodes.json:ro \
    --add-host=host.docker.internal:host-gateway \
    --name=federation -p 8080:8000 neurobagel/federation_api

NOTE: You can replace the port number 8080 for the -p flag with any port on the host you wish to use for the API.