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neuroinformatics-unit
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derotation
Derotate images acquired via 2-photon or 3-photon calcium imaging
BSD 3-Clause "New" or "Revised" License
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Find centre of rotation (tentative 2)
#30
lauraporta
opened
4 days ago
2
More explanations and visualisations are needed
#29
lauraporta
opened
3 weeks ago
0
Update workflows and add dependabot yml
#28
lauraporta
closed
1 month ago
1
More features to the `Rotator` / microscope simulation
#27
lauraporta
opened
1 month ago
2
Rotation plane misalignment
#26
lauraporta
opened
1 month ago
1
Add Rotator
#25
lauraporta
closed
3 weeks ago
4
Find centre of rotation
#24
lauraporta
closed
4 days ago
4
Use contrast enhancement to improve registration
#23
lauraporta
opened
3 months ago
0
Add dashboard to visualize the output of the derotation after suite2p processing
#22
lauraporta
opened
3 months ago
1
Add allen institute vendored code + Neuropil subtraction exploration
#21
lauraporta
opened
3 months ago
0
Patch missing commit: apply latest suggestions from Joe
#20
lauraporta
closed
3 months ago
1
Investigate ValueError warning coming from tiffile
#19
lauraporta
opened
3 months ago
1
Include fastplotlib dashboard to visualise results of the derotation and effects on ΔF/F
#18
lauraporta
opened
4 months ago
0
Test sensitivity of different neuropil subtraction methods to artifacts
#17
lauraporta
opened
4 months ago
0
Flexibility to different kinds of motors
#16
lauraporta
opened
4 months ago
0
Improve script to run slurm jobs
#15
lauraporta
opened
4 months ago
1
Find dark angles
#14
lauraporta
opened
4 months ago
0
Add method to calculate angular velocity and save it to the `csv`
#13
lauraporta
opened
4 months ago
0
Find optimal centre of rotations
#12
lauraporta
opened
4 months ago
1
Contrast enhancement and registration
#11
lauraporta
opened
4 months ago
3
Refactoring of the main classes
#10
lauraporta
closed
3 months ago
3
Use updated upload_pypi action
#9
niksirbi
closed
6 months ago
0
Increase test coverage
#8
lauraporta
opened
11 months ago
1
General refactoring of the classes
#7
lauraporta
closed
3 months ago
0
Refactor usage of paths / config files
#6
lauraporta
opened
11 months ago
1
Scritp for slurm job
#5
lauraporta
closed
11 months ago
0
Change saving name for derotation debug plots incremental
#4
lauraporta
closed
11 months ago
1
First working implementation of the derotoation package
#3
lauraporta
closed
11 months ago
1
First working implementation of the derotation package
#2
lauraporta
closed
1 year ago
0
Version 0.1, working script for derotation
#1
lauraporta
closed
1 year ago
0