neuronets nobrainer issues

neuronets / nobrainer

A framework for developing neural network models for 3D image processing.

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issues

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Out of Memory Error When Using BrainGenerator for Extended Periods

#346 spikedoanz closed 4 months ago
29
Correct way to specify loss

#345 hvgazula opened 4 months ago
0
Modifying guides and re-running checks isn't pulling in the latest code.

#344 hvgazula opened 4 months ago
0
Rewrite metrics module with model subclassing

#343 hvgazula opened 4 months ago
1
Add test for synthseg generator in notebooks (to run on aws)

#342 hvgazula closed 4 months ago
0
Synthseg

#341 hvgazula closed 4 months ago
1
Synthseg

#340 spikedoanz closed 4 months ago
2
Filtering nonzero volumes in dataset conflicts with pgan training

#339 hvgazula opened 5 months ago
1
SynthSeg Brain Generation fails when randomise_res is set to True

#338 hvgazula closed 3 months ago
6
synthseg in nobrainer

#337 hvgazula closed 5 months ago
1
Add filter to drop examples (blocks) which are uniform (all zeros)

#336 hvgazula opened 5 months ago
2
Unable to restore custom metric when init_from_checkpoints is used

#335 hvgazula opened 6 months ago
0
Add initial_epoch to Segmentation.fit()

#334 hvgazula closed 6 months ago
2
Passing checkpoint related arguments from outside Segmentation

#333 hvgazula opened 6 months ago
0
Integrate initializing from checkpoint

#332 hvgazula closed 6 months ago
3
Get checkpoint based on create time is probably not a good idea

#331 hvgazula opened 6 months ago
6
Dev

#330 hvgazula opened 7 months ago
0
Sharding doesn't result in examples of specified size

#329 hvgazula closed 5 months ago
2
refactor code to calculate records per shard using n_volumes and number of shards

#328 hvgazula opened 7 months ago
2
Modify mapping function to mask out segments that are surplus in the label volume

#327 hvgazula closed 7 months ago
2
model evaluation on random samples during training is not straightforward

#326 hvgazula closed 7 months ago
3
Refactor code to identify correct steps per epoch

#325 hvgazula opened 7 months ago
1
specifying full file path as part of shard template fails with "File Not Found Error"

#324 hvgazula closed 7 months ago
4
brainy training script failing at validation for kwyk records

#323 hvgazula closed 6 months ago
0
remove redundant argument

#322 hvgazula closed 6 months ago
1
Add data count to tfrecords

#321 hvgazula opened 7 months ago
6
[pre-commit.ci] pre-commit autoupdate

#320 pre-commit-ci[bot] opened 7 months ago
0
Fix PGAN notebook

#319 satra closed 7 months ago
0
fix dependencies

#318 satra closed 7 months ago
0
Shape mismatch at the output on unet when n_classes > 1

#317 hvgazula closed 5 months ago
4
typo: replace label_mapping with mapping

#316 hvgazula closed 5 months ago
0
map_labels fails for n_classes > 1

#315 hvgazula opened 7 months ago
1
explicit repeat of dataset before calling fit method

#314 hvgazula opened 7 months ago
2
suggested refactoring to avoid OOM errors

#313 hvgazula opened 7 months ago
1
Redundancy in serializing shapes of feature and label volumes

#312 hvgazula opened 7 months ago
0
Could this have been a typo?

#311 hvgazula opened 7 months ago
0
Remove redundant method

#310 hvgazula opened 8 months ago
0
Update setup.cfg to add cuda option

#309 satra closed 7 months ago
0
Fix PGAN issues

#308 hvgazula opened 8 months ago
7
Revert "[WIP] ConvneXT Models for Classification and Segmentation"

#307 hvgazula closed 8 months ago
0
Typo in processing.segmentation.Segmentation

#306 hvgazula closed 8 months ago
1
CI to stop if http connection failures occur

#305 hvgazula closed 8 months ago
4
http://datasets.datalad.org/ goes to bed every night?

#304 hvgazula closed 8 months ago
3
Add feature to list available models in Segmentation

#303 hvgazula closed 8 months ago
3
test for variational meshnet is failing on github runner

#302 hvgazula closed 8 months ago
0
Add test_unetr() in model_tests.py

#301 hvgazula opened 8 months ago
1
Add tests to convnext model

#300 hvgazula closed 8 months ago
1
Update setup.cfg

#299 satra closed 8 months ago
0
Extend model tests to n_classes > 1 and channels > 1

#298 hvgazula opened 8 months ago
0
Missing test for bayesian_meshnet

#297 hvgazula closed 8 months ago
0