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neuropoly
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axonseg
Segment axon and myelin from microscopy data. Written in Matlab.
MIT License
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Matlab path?
#57
GPana
opened
4 years ago
2
Error in tutorial
#56
gabirelasanchezzz
closed
4 years ago
4
uigetimagefile_v2
#55
nickolombia98
closed
5 years ago
2
csv_output_file
#54
asud1
opened
5 years ago
4
removing false-positives
#53
asud1
opened
5 years ago
2
what is the difference between AVF and Number_axons
#52
jcohenadad
opened
6 years ago
2
Installer error message when installing AxonSeg on OSX
#51
oumayb
opened
6 years ago
9
Error using as_myelinseg2axonlist
#50
davidrs06
closed
6 years ago
8
Duplicated seg for some axons when generating maps
#49
alzaia
closed
6 years ago
2
One "SegParameters" for two different sets of images
#48
onarvaez
closed
6 years ago
9
include axons manually
#43
vvargas87
closed
7 years ago
1
Compile Windows version
#42
tanguyduval
closed
7 years ago
5
Documentation
#41
tanguyduval
closed
7 years ago
0
Maximum diameter
#40
lconcha
closed
7 years ago
3
ManualCorrectionGUI Help
#39
SegDaltonico
closed
7 years ago
12
Error Inolving 'ind2rgb8' during full segmentation
#38
SegDaltonico
closed
7 years ago
9
µm --> um
#37
tanguyduval
closed
7 years ago
0
remove pixelsize from root of segparam
#36
tanguyduval
closed
7 years ago
0
Platform compatibility - check for Windows (problem with ind2rgb8 in Matlab 2016)
#35
alzaia
closed
7 years ago
0
Check toolboxes needed to run AxonSeg on Matlab
#34
alzaia
closed
7 years ago
1
CHANGE THE NAME OF THE OUTPUT OF STATS_DOWNSAMPLE MTV --> MVF
#33
tanguyduval
closed
7 years ago
1
ManualCorrectionGUI
#32
tanguyduval
closed
7 years ago
1
Interface
#31
tanguyduval
closed
7 years ago
1
ManualCorrectionGUI --> bug
#30
tanguyduval
closed
8 years ago
1
myelinInitialSegmention --> pix_size should be optionnal
#29
tanguyduval
closed
7 years ago
1
as_stats_downsample --> add new stats
#28
tanguyduval
closed
7 years ago
0
Error using message/getString ... Unable to load a message catalog 'mg:textedit'.
#27
ngoertz
closed
7 years ago
28
Find parameters for step 2
#26
tanguyduval
closed
8 years ago
6
Stiching
#25
tanguyduval
closed
7 years ago
1
Markov Random Fields discussion
#24
alzaia
closed
8 years ago
0
to change for V2
#23
SaraDupont
closed
8 years ago
2
Make a "template" DA classifier with a max of training data, to be used on our coming histology data.
#22
alzaia
closed
7 years ago
1
Sliders choice in step2 of the GUI (axon discrimination)
#21
alzaia
closed
8 years ago
0
Template
#20
tanguyduval
closed
7 years ago
2
[DOC] Add image of spinal cord tracts in the readme
#19
tanguyduval
closed
7 years ago
2
Find Myelin Volume Fraction from axon diameter
#18
tanguyduval
closed
7 years ago
22
[NEW] Create function to register colored ROI mask to histo + Stats in ROI
#17
tanguyduval
closed
6 years ago
5
[Seg] smooth AxonSeg contour
#16
tanguyduval
closed
8 years ago
1
[DISTRIB] Indicate Support Location
#15
tanguyduval
closed
7 years ago
1
[DISTRIB] Create a Version 1 Package
#14
tanguyduval
closed
9 years ago
1
[DISTRIB] Check Matlab dependencies (Matlab toolboxes) + Installation instruction
#13
tanguyduval
closed
7 years ago
14
Parameters analysis in axon segmentation (EquivDiameter, MajorAxis, MinorAxis, Circularity,...)
#12
alzaia
closed
7 years ago
10
[BUG] Set handles.state just before saving
#11
alzaia
closed
9 years ago
0
[BUG] Deconv is slow --> Add warning that Matlab is Processing
#10
alzaia
closed
9 years ago
0
[NEW] Add load parameters button
#9
tanguyduval
closed
9 years ago
0
[TEST] create a integrity test function
#8
tanguyduval
closed
7 years ago
1
[DOC] Batch
#7
tanguyduval
closed
7 years ago
2
[DOC] Invert Color
#6
tanguyduval
closed
9 years ago
0
[ENHANCEMENT] VISUALIZATION IN STEP 1
#5
tanguyduval
closed
9 years ago
0
[ENHANCEMENT] circularity threshold should be dependent on axon diameter
#4
tanguyduval
closed
8 years ago
2
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