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neuropoly
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template
A framework for creating unbiased MRI templates of the spinal cord
MIT License
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Removal of redundancy in the suffix in the configuration file
#36
rohanbanerjee
closed
1 year ago
1
Update code according to new `configuration.json` file
#35
NadiaBlostein
closed
1 year ago
1
Remove loading of npz for centerline
#34
jcohenadad
closed
1 year ago
1
Make the preprocessing pipeline rely on SC segmentation OR centerline
#33
jcohenadad
opened
1 year ago
0
Centerline extraction should not be done in `template_preprocessing.py`
#32
jcohenadad
opened
1 year ago
0
Change `segment_sc_discs_deepseg.sh` to only accept a single contrast
#31
jcohenadad
closed
1 year ago
1
Remove `contrast` parameter in the `template_preprocessing.py` script
#30
jcohenadad
closed
1 year ago
1
Get data suffixes from `configuration.json` file for the `segment_sc_discs_deepseg.sh` script
#29
jcohenadad
closed
1 year ago
1
Adding a configuration_default.json file which is git-tracked
#28
rohanbanerjee
closed
1 year ago
1
Make data-agnostic versions of scripts have suffix `_default`
#27
NadiaBlostein
opened
1 year ago
0
Add the last_disc value to the configuration.json
#26
rohanbanerjee
closed
1 year ago
1
Removal of the segment_batching_script
#25
rohanbanerjee
closed
1 year ago
0
Change the segmentation suffix and the location of the segmentation in the segment_sc_discs_deepseg.sh
#24
rohanbanerjee
closed
1 year ago
1
SCT version - update to the stable version
#23
rohanbanerjee
opened
1 year ago
0
Issue while straightening spinal cord
#22
rohanbanerjee
closed
11 months ago
4
Once SCT version is out, update the README that indicates which version of SCT this pipeline relies on
#21
jcohenadad
opened
1 year ago
0
Unexpected parameter space = 'phys' in the get_centerline method
#20
rohanbanerjee
closed
11 months ago
1
Mix between system call and library import
#19
jcohenadad
opened
1 year ago
0
Update pipeline for SCT's master branch version
#18
NadiaBlostein
closed
1 year ago
1
Format with 'tree' structure and use proper formatting
#17
jcohenadad
closed
11 months ago
4
Nb/updated all
#16
NadiaBlostein
closed
1 year ago
2
Nb/disk to disc
#15
NadiaBlostein
closed
1 year ago
0
Nb/update generate initial template space
#14
NadiaBlostein
closed
1 year ago
0
Rb/changes to generate centerline method
#13
rohanbanerjee
closed
1 year ago
0
Rb/changes to read dataset method
#12
rohanbanerjee
closed
1 year ago
0
Added sample config file
#11
rohanbanerjee
closed
1 year ago
0
Updating: packages imported into preprocessing.py
#10
NadiaBlostein
closed
1 year ago
0
Update preprocessing.py
#9
NadiaBlostein
closed
1 year ago
0
Link not working to sample dataset
#8
NadiaBlostein
opened
1 year ago
3
Consider moving hard-coded information in project-specific config files
#7
jcohenadad
closed
11 months ago
1
msct_image does not exist in the newer versions of SCT
#6
armaneshaghi
closed
5 years ago
7
Mis-alignment visible in final template
#5
jcohenadad
opened
5 years ago
0
Unify template-creation framework
#4
jcohenadad
opened
5 years ago
1
Error using scoop on example data
#3
charleygros
closed
5 years ago
4
tqdm and sct_straighten_spinalcord param names
#2
charleygros
closed
6 years ago
0
Convert_data2mnc
#1
shshiva
closed
6 years ago
2
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