nextflow-io nextflow issues

nextflow-io / nextflow

A DSL for data-driven computational pipelines

http://nextflow.io

Apache License 2.0

2.71k stars 621 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Improve documentation of named args

#5171 bentsherman closed 5 days ago
1
Add runtime error for missing channel factory

#5170 bentsherman closed 2 months ago
1
Update script.md for mklink

#5169 bjlang closed 2 months ago
3
Variable with same name within separate functions conflicting with each other

#5168 ashtonteng closed 2 months ago
2
Improve fusion docs

#5166 pditommaso closed 2 months ago
2
Bump Azure sku ubuntu 22.04

#5165 pditommaso closed 2 months ago
2
Error finding Python in HPC environment

#5164 jreimertz closed 2 months ago
5
Improve error message for topic channel feature flag

#5161 bentsherman closed 2 months ago
1
Apply k8s.cpuLimits to kuberun driver pod

#5160 bentsherman closed 2 months ago
2
Passing CPU limits to orchestrator pod when using Kubernetes and `kuberun`

#5159 grimbough closed 2 months ago
1
[Docs] Plugin test repository note

#5157 llewellyn-sl closed 2 months ago
1
Pass `$SINGULARITY_` env variables through

#5155 Flamefire opened 2 months ago
0
Fix queue docs

#5154 pditommaso closed 2 months ago
1
AWS Batch single queue only

#5153 jason-seqera closed 2 months ago
3
Prevent default output/error logs for job arrays

#5152 bentsherman closed 1 month ago
1
resourceLabels in config are overwritten by process

#5151 tvanbaak opened 2 months ago
5
Calls: emptyDrops ... .test_empty_drops -> ambient.FUN -> .compute_ambient_stats Execution halted

#5150 Zhixin1994 closed 2 months ago
0
Make auto retry codes configurable

#5148 pditommaso closed 2 months ago
1
Parameterize channel topic name with process inputs

#5147 kgalens closed 2 months ago
7
Fix aws logs group name

#5146 pditommaso closed 2 months ago
1
Delay in recording a task as succeeded

#5143 siddharthab closed 2 months ago
0
Nested params default subset

#5142 VasLem closed 2 months ago
0
Improve Google Batch 5000x error class handling

#5141 pditommaso closed 2 months ago
6
Support for confidential compute in GCP

#5140 Puumanamana opened 2 months ago
1
call process in workflow.onError

#5138 ChenDepp closed 2 months ago
0
Support more retryable exit codes for Google Cloud Batch

#5136 siddharthab closed 2 months ago
6
Starting Nextflow in a singularity container and use it to run another singularity container

#5134 anuravi1234 closed 2 months ago
0
Specific Singularity container not working when running inside of Nextflow

#5132 marchoeppner closed 2 months ago
1
Opinion on module-based publishing

#5128 Midnighter closed 2 months ago
0
How will the new publishing play with class-based channel values?

#5127 Midnighter closed 2 months ago
0
Support scratchless execution with Google Cloud Batch

#5125 siddharthab closed 2 months ago
7
chore: Upgrade docs version.

#5124 gavinelder closed 2 months ago
2
Improve wording for errorStrategy examples

#5123 adamrtalbot closed 2 months ago
1
Link to other docs on the failOnIgnore option

#5122 jfy133 closed 2 months ago
3
Adds example of error strategies to documentation

#5121 adamrtalbot closed 2 months ago
3
4920: Azure Batch supports process.disk directive

#5120 adamrtalbot opened 2 months ago
2
Improve description of workflow.failOnIgnore

#5119 jfy133 closed 2 months ago
1
GCloud: Mounted directories not writable

#5118 VasLem closed 2 months ago
0
Add ability to override failOnError setting default via env variable

#5117 pditommaso closed 2 months ago
1
Error when using Shifter as container runtime in Nextflow >23.08.0-edge

#5115 jackscanlan opened 2 months ago
0
Fix normalization of consecutive slashes in uri path

#5114 pditommaso closed 2 months ago
1
Documentation clarification for `failOnDuplicate` and `failOnMismatch`

#5113 robsyme closed 2 months ago
1
Fix publish error when remote path contains double slash

#5112 bentsherman closed 2 months ago
2
`arity` fails on optional input or output paths

#5111 nvnieuwk opened 3 months ago
4
Singularity images naming convention and writing permission to cache library

#5109 LouisLeNezet closed 3 months ago
0
Azure Batch validates the region before checking available VMs

#5108 adamrtalbot opened 3 months ago
3
Docs: Pending tasks won't execute

#5106 ewels closed 2 months ago
1
nextflow run hangs at wget

#5105 brucemoran closed 3 months ago
0
Installation instructions - new terminal onto its own line

#5104 ewels closed 2 months ago
1
Finalize workflow output definition

#5103 bentsherman opened 3 months ago
25

Previous Next