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nextstrain
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lassa
Nextstrain build for Lassa virus
https://nextstrain.org/staging/lassa
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hotfix: use lowercase segment and gene names when part of filenames
#41
j23414
closed
1 month ago
0
Add a GPC dataset
#40
j23414
closed
1 month ago
0
hotfix: fix typo in name
#39
j23414
closed
1 month ago
0
Improved Segment Length Filtering
#38
j23414
closed
3 weeks ago
1
Write rules to identify new GPC sequences compared to manually fixed alignment
#37
j23414
opened
1 month ago
0
Change the S segment min-length to 2000
#36
j23414
closed
3 weeks ago
0
Pull out GPC sequences during ingest workflow
#35
j23414
closed
1 month ago
0
Update acknowledgements
#34
j23414
closed
2 months ago
0
Push live build on to nextstrain.org
#33
j23414
closed
2 months ago
0
Get live pathogen build onto nextstrain.org
#32
trvrb
opened
2 months ago
0
Include updated description for page footer
#31
trvrb
closed
2 months ago
0
Dynamically generate segment reference files
#30
j23414
opened
2 months ago
0
Create lassa Nextstrain build
#29
genehack
opened
2 months ago
1
Push to live
#28
j23414
closed
2 months ago
1
Add logs and benchmarks
#27
j23414
closed
2 months ago
0
Add logs and benchmarks for most rules
#26
j23414
closed
2 months ago
0
Ingest: add lab host fields from ncbi datasets
#25
j23414
closed
2 months ago
0
ingest: Add lab host fields from NCBI Datasets
#24
j23414
closed
2 months ago
0
Update references to match RefSeq
#23
j23414
closed
2 months ago
5
Consistently pick a reference strain for all builds
#22
j23414
closed
2 months ago
0
Adds required GPC references
#21
JoiRichi
closed
2 months ago
2
Request to add a GPC Phylogenetic Tree
#20
JoiRichi
opened
2 months ago
5
Drop lab passaged strains
#19
j23414
closed
2 months ago
0
Add host annotation to tips of the phylogenetic tree
#18
j23414
closed
2 months ago
0
Update the main README instructions
#17
j23414
closed
2 months ago
0
Deal with duplicate strain names
#16
j23414
opened
2 months ago
0
Add frequencies plot
#15
j23414
closed
1 month ago
1
Push to production rather than staging after completing automated build
#14
j23414
closed
2 months ago
0
add phylogenetic workflow
#13
j23414
closed
2 months ago
0
Separate curated data by L and S segments
#12
j23414
closed
3 months ago
8
Fix missing strain names for 1351 records
#11
j23414
closed
3 months ago
1
Test if anyone sees this PR
#10
j23414
closed
3 months ago
6
Migrate to augur curate
#9
j23414
closed
3 months ago
0
Add phylogenetic
#8
j23414
closed
2 months ago
1
Rename `master` to `main`
#7
j23414
closed
2 months ago
1
Add ingest
#6
j23414
closed
3 months ago
0
ci.yaml: Pin `pathogen-repo-ci`
#5
joverlee521
closed
4 months ago
0
Add consistency in pathogen input files
#4
j23414
closed
10 months ago
2
chore: Nextstrain/styleguide
#3
j23414
closed
1 year ago
1
Migrate CI to GitHub Actions
#2
victorlin
closed
2 years ago
1
CI: Upgrade setuptools suite prior to installation
#1
huddlej
closed
2 years ago
0